| Entry |
|
|---|
| Name |
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 isoform X1
|
|---|
| KO |
|
|---|
| Organism |
csat Camelina sativa (false flax)
|
|---|
| Pathway |
|
|---|
| Brite |
KEGG Orthology (KO) [BR:csat00001]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104779867
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:csat03041]
104779867
Enzymes [BR:csat01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104779867
Spliceosome [BR:csat03041]
Complex C
Other components
Step II factors
104779867
|
|---|
| SSDB |
|
|---|
| Motif |
|
|---|
| Other DBs |
|
|---|
| LinkDB |
|
|---|
| Position |
4:complement(5347448..5357689)
|
|---|
| AA seq |
1176 aa
MEKEELNKLNHLSLVSNVCNELETHLGSAEKVLAEFIIDLGRHSDTVDEFDKKLKEQGAE
MPDYFVRSLLTVIHAIYPPKPKSEKKREEGEDVKFKGLAIKDTKDKVKELEKEIEREAEE
RRRAEDGNRDRERGRDRRDSGRDRDRDRGRDRNRDDRRDRHRDDRESHRGDEEGEDRRSD
RRHRDRGRGDEEGEDRRRDRRAKDEYVEEDRGGAVANEPELYQVYKGRVTRVMDAGCFVQ
FDKFRGKEGLVHVSQMATRRVEKPKEFVKRDMEVYVKVISNSNDKLSLSMRDVDQNTGRD
LIPLRKPSDEDDSSRSNPSYRTKDGQVTKTGISGIRIVEENDVAPSRRPLKKMSSPERWE
AKQLIASGVLRVDEFPMYDEDGDGMLYQEEGAEEELEIEMNEDEPAFLQGQTRYSVDMSP
VKIFKNPEGSLSRAAALQSALTKERREMREQQQRTMLDSIPKDLNRPWEDPMPETGERHL
AQELRGVGLSAYDMPEWKKDAFGKTPTFGQRSKLSIQEQRESLPIYKLKKELIQAVHDNQ
VLVVIGETGSGKTTQVTQYLAESGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEV
GYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIHTDVLFGLLK
KLMKRRLDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPETDYLDAALI
TVLQIHLTEPEGDILVFLTGQEEIDSACQSLYERMKGLGKNVPELIILPVYSALPSEMQS
RIFDPPPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQGLESLVITPISQA
SAKQRAGRAGRTGPGKCYRLYTESAYRNEMPPTSIPEIQRINLGMTTLTMKAMGINDLLS
FDFMDPPQPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLGCS
DEILTMIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWC
FENFIQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFTKIRKAITAGFFFHGARKDPQE
GYRTLVENQPVYIHPSSALFQRQPDWVIYHDLVMTTKEYMREVTVIDPKWLVELAPRFFK
VSDPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA |
|---|
| NT seq |
3531 nt +upstreamnt +downstreamnt
atggagaaagaagagcttaacaaattgaatcacctctctctcgtatccaatgtctgcaac
gagttagaaacgcatctaggatctgcggagaaagttttggcagagttcatcatcgatctc
ggtcgtcactccgatactgtagatgaattcgataagaagctcaaggagcaaggtgcggag
atgcctgattacttcgtccggtcgctgttaactgtaatccacgcgatttatcctccgaag
cctaagtctgagaagaagagagaggaaggtgaggatgttaaattcaaaggtttggcgatt
aaggatactaaggataaagtcaaggagcttgagaaggagattgaaagagaagctgaggag
cgacggagagccgaggatgggaatagggatagagagaggggtcgggatcggagggattcg
ggtagggatagggatagggatagaggtagagataggaaccgtgatgatagaagggatcga
catagggatgatagagagagtcaccgtggagatgaggaaggtgaagatagaagaagtgat
aggaggcatagagatagaggtcgtggcgatgaggaaggagaagataggcgtagagatagg
cgtgcgaaggatgagtatgtggaggaagatagaggcggtgcggttgcgaatgagcctgag
ttgtatcaggtatacaaagggagggttactagggttatggatgctggttgttttgttcag
tttgataaatttaggggaaaggaaggtcttgttcatgtttctcagatggctactagaagg
gttgagaagcctaaggagtttgtgaagcgggatatggaggtttatgtgaaagtgatatct
aattcgaatgataagttaagtctttctatgagagatgttgatcagaatacgggtagagat
ttgattcctctgaggaagccttcagatgaggatgattcgtccaggagtaatccttcgtat
aggacaaaggatggacaagtaactaagactgggatttcgggaatcaggattgtagaggag
aatgatgttgcaccttcacgtaggccattgaagaagatgagctctcctgagagatgggaa
gcgaaacagttgattgcctctggtgtcttgagagttgatgagtttccaatgtatgatgag
gacggagatgggatgctttatcaagaggaaggtgctgaagaagaacttgagattgagatg
aatgaagacgaacctgctttcttacaagggcaaactaggtactctgttgacatgtctccg
gttaagatcttcaaaaatccagaaggttccttgagtcgcgcagctgcacttcagtccgcc
ctcaccaaggagaggagagaaatgagggaacagcagcaaagaacaatgcttgactcaatc
cccaaggatctgaatcgtccatgggaagaccctatgcctgaaactggtgaaaggcatctt
gctcaagagcttagaggtgttgggttatcagcttatgacatgcctgagtggaagaaggat
gcctttggaaaaactcctacttttggacagagatctaagctttctattcaggaacaaagg
gagagccttccgatatacaagttgaaaaaagaacttatacaggctgtgcatgataatcaa
gttttggttgtcattggtgagactgggtctggaaagacaacacaggtaactcagtatctt
gccgaatcaggttacacaacaaggggaaagatcgggtgtactcagcctcgtagggttgct
gcgatgtctgtggccaagagagtagctgaggagtttggttgtcgtttaggagaggaggta
gggtatgcgattcggtttgaggattgtactggaccagatacagtgatcaagtacatgact
gatggtatgcttcttagggagattcttatagatgaaaacctctctcaatactctgtaatc
atgcttgatgaagctcacgagcggacaatccacactgatgtgctttttggtcttctaaag
aagctgatgaaacgtcgacttgatcttcgtctgattgtcacgtctgccacattggatgca
gagaagttctctgggtatttcttcaactgcaacatctttaccattcctggaagaaccttt
cctgttgagatactgtatactaaacagccagaaacagattacttggatgcggctctgatc
acagtccttcagattcacttgactgaacctgagggggacattctcgtctttttgactgga
caggaagaaatcgattctgcatgccaatctctatatgagagaatgaaaggtctaggtaaa
aatgttcctgaactcatcatacttccagtttacagtgcccttcctagtgaaatgcaatct
agaatatttgatcctccacctcctggtaaacggaaagtggtcgtagctacaaatattgca
gaagcttctctaacaatagatggtatatactatgttgttgatcctgggtttgcaaagcag
aacgtgtacaatccaaagcaagggctagaatcgctagtcattactccaatttcacaggca
tcggcaaagcaaagagctggacgtgctggtcgtactgggcccgggaaatgttaccgtctc
tacacggaaagcgcatatcgtaatgagatgcctcctacatcaatccctgaaattcaaaga
attaatcttggaatgacaaccctgaccatgaaagccatgggtattaatgacctgctatcg
tttgacttcatggatccacctcaaccacaagcattgatctctgcaatggaacagttgtac
agcctgggagctttggatgaagaaggtttgttgacgaagcttggtagaaaaatggcagag
tttcctcttgaaccgccgctttctaaaatgttgctagcaagtgtggatctcgggtgcagc
gatgagattttaacgatgattgctatgatccagacgggcaacatattttatagaccgagg
gagaagcaagctcaggcagaccaaaaacgggcaaagtttttccagcccgagggtgatcac
ctgacattactggctgtatatgaggcgtggaaggccaaaaacttctcaggtccatggtgt
tttgaaaatttcattcagtcaagatcgttacgacgtgctcaagatgtgaggaaacaactt
ctcagcattatggacaaatataaactagatgtggtgagtgcggggaagaatttcacgaag
ataaggaaagcaatcacggcaggattcttcttccatggagcaaggaaagatccacaggaa
ggttacaggacactagtggagaatcaaccggtgtatatacacccgagcagcgcgctgttc
cagagacaaccagactgggttatatatcatgatcttgtgatgacgaccaaagagtacatg
agggaagtaactgtgattgacccaaagtggcttgttgagttagctccaaggtttttcaaa
gtctctgacccaacgaaaatgagcaagcgcaagcgccaagaacgcattgagcctttgtat
gaccggtaccacgagcctaactcatggcgtctcagcaaaagacgtgcttga |
|---|
