Camelina sativa (false flax): 104780386
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Entry
104780386 CDS
T05044
Name
(RefSeq) uncharacterized protein LOC104780386 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104780386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csat03000
]
104780386
03019 Messenger RNA biogenesis [BR:
csat03019
]
104780386
04121 Ubiquitin system [BR:
csat04121
]
104780386
Enzymes [BR:
csat01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104780386
Transcription factors [BR:
csat03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
104780386
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104780386
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104780386
Ubiquitin system [BR:
csat04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104780386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-UDP
MupG_N
Rtf2
PcfJ
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
104780386
NCBI-ProteinID:
XP_010503181
UniProt:
A0ABM0YMC9
LinkDB
All DBs
Position
4:complement(12863567..12869251)
Genome browser
AA seq
981 aa
AA seq
DB search
MSDYGEKTCPLCAEEMDLTDQQLRPCKCGYQICVWCWHHIMDMAEKDHSEGRCPACRTPY
DKEKIVGMTVDQERLASDGKKTQKSKLKPSEGRKQLTSVRVVQRNLVYIVGLPLNLADED
LLHRKEYFGQYGKVLKVSMSRTPTGLIQQFPNNTCSVYITYGKEEEAARCIESVRGFILD
GKALKACFGTTKYCHAWLRNVACNNPDCLYLHEVGSHEDSFTKDEITSAHTRVQQITGAS
NTMQYRSGSMLPPPSDAYCIDSSTAKPIAKVPSNTAVSAPKGSPPSGSSGKSTALPAAAS
WGARLTTNHNSIATSAISNGSLDNRRSPSENGTLAMSTVVANAAHGSVSSSNTLQKPPHK
EEFQILAGKSKPGMLKPVQHKIVVDPGSKRSTSPNRDPTSNQISFLVESSHNSRVIDKPS
AVENSFEHTDEIAEDVSHVSNLSADVARMGITTISKDEGPSVPVAIGIHCDQGSIRQPGN
DVSNLEQCRMHRNTDAEADILQNGIHGSRPEWDWRSGLQSQIDVKLKVDDLSSFKNNRRD
VAKAISDSSYMLSSSSSVLDSNNLASRSFQTRETPGGMDSDIRSSFDIGNYRLHLPNGFS
EKSISNMEHSLFAIESRNNMQNTEDGIISNILDFDPWDDTLASSHNFAKLLGQSDHRAST
LESSNLIKQNNDQSRFSFARHEESNNQVYDSKSYSISGQLSRDQPLQEFGVNRDMYQDKL
GSQNGFASNYSGGYEQFAAIAGLSSYKSPVARTQVSAPPGFSAPNRLPPPGFSSHERADL
SSDIGSGTRLLEAAAFLKNTYHIPPPSGNSNAAGDIEFIDPAILAVGRGRLHNGMETADF
DMRSGFSSQLNSFENDPRLQLLAQRSLAAQQVNGYHDPRNVNNFSSSLSDPYGISSRLMD
QTQGTGLSPFTQLPRQTSPSPLLSNGHWDKWNDPQSGNTLGITQLLRSERMGFNDNVYSR
FEEPNYQRPSPGDPYNRTYGM
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgagtgattacggtgaaaagacttgccctttgtgtgcagaggagatggatttgactgac
cagcagttgaggccttgtaaatgtggctatcagatttgtgtttggtgctggcaccacata
atggacatggctgaaaaagatcactcagaagggcgctgtccagcttgccgcactccatat
gacaaagaaaagattgttgggatgactgttgatcaggagagactggcctctgatggcaaa
aaaacacagaagtcaaaactgaaaccttctgaagggagaaagcaactaaccagtgttcga
gtggttcaaagaaatcttgtctacattgttgggttgccacttaatctagcagatgaagat
cttctccaccgtaaggaatattttggtcagtatggaaaggttctaaaggtttctatgtcc
cgaacaccaacgggtctcattcaacagttccctaacaacacatgcagtgtatatatcact
tatggcaaagaggaagaggctgctcgatgcatcgagtccgttcgtggatttatcttggat
ggtaaagcactgaaggcatgttttgggacaaccaagtattgtcacgcatggttaagaaac
gtggcatgcaacaatcctgattgcctctatttgcacgaggttggctctcacgaggatagt
tttacaaaagatgagatcacatcagcccatacaagagttcagcaaattactggagcctca
aatactatgcaataccgttcagggagcatgctacctccaccatcggatgcttattgcatt
gacagttctactgcaaaaccaattgcaaaagttccttctaatactgcagttagtgctccc
aagggttctccacctagtgggagctctggtaaatcaactgctcttcctgctgcagcatca
tggggggcgcgtttaacaacaaatcataattctatagcaacttcagctatttcaaatgga
tctttggataatcgtagatcaccatcagagaatggaactttggctatgtctacagttgtt
gcaaatgcagctcatgggtctgtatcgtctagtaacactcttcagaaaccacctcacaag
gaagaatttcaaatattggctggaaaaagcaaaccaggcatgttgaagcctgtgcaacat
aagattgtggtggatcctgggtccaagagaagtacatcgcctaatagagatcctactagc
aatcagatatcctttttagtagaatcttcacacaatagcagagtcattgacaagccttct
gctgttgagaattcttttgagcacacagatgaaattgccgaagatgtctctcatgttagt
aacttgtcggctgatgttgcacggatggggataactacaatttctaaggatgaaggtcct
agtgttccagtggctattggtattcattgtgatcaaggttctattagacaacctggtaac
gatgtatcaaatctggagcagtgtagaatgcatagaaacactgatgcagaagctgacata
ttacaaaatgggattcatggttccaggccagagtgggattggagatcaggtttgcaatcc
cagatagatgttaagttgaaagtggatgatctttcatcatttaaaaacaataggcgagat
gttgcaaaggctattagcgactcgtcttatatgcttagttcatcaagttccgtcctggat
tcaaataatctagcttctcgttcttttcagaccagggaaactcctggtgggatggattcc
gatattagatcctcctttgacataggtaactatagattgcatcttccaaacggattttct
gagaaatccatatccaatatggagcattctttatttgcgattgaaagcaggaacaacatg
cagaatacagaggatggtataatttcaaacattttagattttgacccctgggatgatacc
ttggcttcgtcacacaattttgcaaaattacttggccagagtgatcatagagccagtact
ctggaatcttctaacctcataaagcaaaataatgaccagtcccgattctcttttgctcgg
catgaagagtcaaataatcaagtgtatgacagtaagagttacagcatatctgggcagttg
tcaagagatcagcctcttcaagagtttggagtgaaccgtgatatgtatcaggataagctt
gggagtcaaaacggttttgcctcaaattattccggtggatatgaacaatttgctgctatt
gctggattgtcttcctacaagagtcctgtggcgaggactcaagtttctgctcctcctggt
ttctctgctcccaacaggttacctcctcccggtttctcttcacatgaaagagccgacctg
tcttctgatattggatcaggaactcgtttgcttgaggcagccgctttcttgaagaacaca
tatcatataccacctccaagtggcaattcaaatgcagctggagatattgagtttattgat
cctgcaattttagccgttggaaggggaagacttcacaatgggatggaaacggcagacttt
gatatgagatcagggttctcttctcagctgaattcctttgagaacgatccaagacttcaa
ttgttggcacagaggtctctggctgcacaacaagtcaatggatatcacgatcccaggaac
gttaacaacttctcttcttcactctccgacccatatggaattagttcaaggctaatggat
caaacacaaggaactggcttatctccttttacacagttgcctagacaaacttcaccaagt
ccattgttgtcaaatggtcactgggataagtggaatgatccccaaagtggtaacactctt
gggattacccagcttctaaggagtgaacggatgggatttaatgacaatgtctacagccgt
tttgaagagcctaactaccagaggcccagtcccggagatccgtacaacagaacatacggg
atgtga
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