Camelina sativa (false flax): 104780504
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Entry
104780504 CDS
T05044
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11-like isoform X2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104780504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104780504
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104780504
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104780504
mRNA degradation factors
3'-5' decay
Ski complex
104780504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
104780504
NCBI-ProteinID:
XP_010503310
LinkDB
All DBs
Position
4:complement(14132272..14141133)
Genome browser
AA seq
1347 aa
AA seq
DB search
MSRVQAGNELAFRVGFSGHGGHLRVEPLYTAERDDAVNSLPDFVSPPAFAKETKESIKKH
IEEKYLLPRLEPDQFSAEKAENQWEFDWFSRVKVPLQPSLPRSVVLPTWELPFRRQKDDT
ENRAWEPKSVEVDLSEQMYGDQDSGFFPRMVGPPKDFLRGSVNNRPFRPGGLEDSQSSER
VLPEGVSSGQWVQELLNGGPVQTVPPSFKQSLDLGDLMPYPQTWNVYEDQSSHSNASDVK
SSTLSIQFDDLLKKAWEEDAFSELERDDHTAESESLKAEAEPEAIASKSNEANKGIETDA
TVLDEILSSAKTAILTEEAITGNSNKQLRKEGWATKGDSQDIADRFYELVPDMAIEFPFE
LDNFQKEAICCLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKY
RDFCEKFDVGLLTGDVSIRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDV
ERGVVWEEVIIMLPRHINFVLLSATVPNTFEFADWIGRTKQKEIRVTGTTKRPVPLEHCL
FYSGELYKVCENEVFLPKGIKDAKDSQKKKNSNAVSVAPKQHTGSSAHQDGNKSQKHEAH
SRGKQNKHSSAKDLGKSSYSGNSQNNGAFRRSAASNWLLLINKLSKKSLLPVVVFCFSKN
YCDRCADALTGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVLRVQSLLHRGIGVHHA
GLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDALRKFDGKEFRQLLPGEY
TQMAGRAGRRGLDKTGTVVVMCRDEVPDESDLRRIIVGSATRLESQFRLTYIMILHLLRV
EELKVEDMLKRSFAEFHAQKKLPEKQQLLMLKRALPVKNIECIKCEPAIEDYYDLYMEAD
ECNSKMSEAVMQSPNAQNFLVQGRVVVMKPETGIDNLLGVVLKGPSNNNRQYIILVIKSE
IPPPEKNMVSIGKKSSDPSQGYFIAPKSKRGFEEEFYTKPSSRKGSVVIKIELPYHGVAA
GVGYEVKGFDNKEFLCICDSKIKIDQFRLLEDGNKAAFSQTVQQLLDLKSNGNKYPPALD
PIKDLKLKDAELVETYYKWTSLLQKMSANKCHGCVKLEEHMKLAREIKKHKKDLKDLEFQ
MSDEALLQMPAFQGRIDVLKEIGCIDEDLVVQIKGRVACEMNSGEELICTVCLFENQFEE
LEPEEAVAIMSAFVFQQKNTSAPSLTPKLAKAKQRLYDTAIRLGELQAQYNLQIDPEEYA
QENLKFGLVEVVYEWAKGTPFAEICELTDVPEGLIVRTIVRLDETCREFKNAAAIMGNSA
LHKKMDMASNAIKRDIVFAASLYVTGV
NT seq
4044 nt
NT seq
+upstream
nt +downstream
nt
atgagcagagtccaagcaggcaacgaacttgccttccgtgtcgggttctccggtcatggt
ggtcacctccgcgttgagcctctatacacggcggagagagacgacgccgtgaactcactt
ccagatttcgtatcccctcctgcttttgccaaagaaacaaaagaatcaataaagaaacat
atcgaggagaaatatctcctaccaagactggaaccggatcagttttctgctgaaaaagct
gagaatcagtgggagtttgattggttttccagggtgaaggtgccacttcaaccctctttg
ccaaggtccgttgtgcttcccacttgggagttgccattcaggcgtcaaaaagacgatact
gagaacagagcatgggagccaaaatcagtggaggtggatttatcagaacaaatgtacgga
gatcaagattctggattttttccacgaatggttggacctccgaaggattttctgagagga
agtgtcaataatcgcccgttccgtccaggtggcttggaggattcacaatcttcagagaga
gtccttccagagggtgtctctagtggccaatgggtacaggaattgctcaatgggggtcct
gttcaaaccgttcctcctagttttaagcagagtttagatcttggagatctgatgccatat
ccccaaacatggaacgtttatgaggatcagagttcacatagcaatgcttcagatgtaaag
tcgagtacgttgtctattcagtttgatgatctgttgaagaaggcatgggaagaagatgct
ttctccgaacttgagagagatgatcatacagctgaatctgagtctctaaaggcagaagct
gaacctgaagctatagcgagcaaaagcaatgaagccaacaagggaatagagactgacgcc
actgtgctggatgagattttgtcatcagcaaaaacagcaatattgacggaagaggcaatc
actgggaacagtaataaacaactacggaaagagggatgggccactaaaggagatagccaa
gacattgccgaccggttttatgagcttgttcctgacatggcgattgaattcccattcgaa
ttagacaactttcagaaggaggctatctgttgtttagagaagggggagtctgtttttgta
gctgctcatacatcagcggggaagacagttgttgcagaatatgcattcgctttagccacc
aagcattgtacacgagctgtttatactgctccaattaaaaccatcagtaaccaaaaatac
agagatttttgtgagaagtttgacgtaggacttctaacaggcgatgtaagcataaggcca
gaggcatcttgtctgatcatgactactgaaatattaaggtcaatgctttatcgtggtgcc
gatatcatacgtgatatagaatgggttatatttgatgaagttcactatgtcaatgacgta
gagagaggggttgtttgggaagaagttatcatcatgttgccaaggcatataaattttgtc
ctcctttctgcaacggtgccaaatacatttgaatttgctgattggattggccgaacaaaa
caaaaagagatacgtgttactggcacgacaaaaagaccagttcccctagagcactgccta
ttttattctggagaactctacaaagtttgtgagaatgaagtttttcttcctaaagggata
aaggatgctaaagattcacaaaagaagaagaattcaaatgcagttagtgtcgctcctaaa
cagcatacaggatcttcagctcatcaagatgggaacaaatctcagaaacatgaagctcat
tctcgtggcaagcagaataaacactcaagtgcaaaagatttgggaaaatcctcttatagt
ggtaacagtcagaacaatggggcttttagacgatcagcagcttcaaattggttactgctt
atcaacaagctctcaaaaaagtccctattacctgtggttgtcttctgtttctcgaagaat
tattgtgatagatgtgctgacgctttgactgggactgacctcactagtagttctgagaaa
agtgaaatccgtgtcttttgcgataaagctttttcaagactgaaagggtctgataggaat
ttacctcaggtcctcagagtccaaagcttacttcatagaggaataggtgttcatcatgct
gggctgcttccaatagtaaaggaagttgttgaaatgcttttttgccgtggtgttattaag
gtgctattttcaacggagacatttgccatgggggttaacgctccagccagaacggtcgtt
tttgatgctttgagaaagtttgatggcaaggaatttagacaattgcttcctggagagtac
actcaaatggcagggcgtgctggcagaagaggacttgacaaaactggcacagttgttgtc
atgtgtcgcgatgaagttccagatgagagtgatctgaggcgtataattgttggaagcgca
acaagactagaatctcagttccgactaacctacataatgatcctccatcttttacgtgtt
gaagaattgaaggtggaggacatgctgaaaagaagttttgctgaattccatgcccagaag
aaattgcccgagaaacagcagcttctcatgctaaaacgtgctctaccagtcaaaaatatc
gaatgtattaaatgtgaaccggcaattgaagattactatgacttgtatatggaagcagac
gaatgtaacagcaagatgtcagaagcagtcatgcagtctcctaatgcccagaactttctt
gtacaaggaagagtagtggtcatgaaacctgaaacgggcatagacaatttactgggagtc
gttctgaagggaccttccaacaataacagacaatatattattttggtaataaaatctgaa
ataccgccaccagagaaaaatatggtcagcattggcaagaaaagctcagatccctctcaa
ggttattttattgcgcccaagtcaaaacgtggttttgaagaagaattttatacgaagcca
agctctcgtaaaggttccgttgtgatcaagatagagctcccgtaccatggagtcgctgct
ggtgtaggttacgaggttaaagggtttgataacaaagaattcttgtgcatatgcgatagc
aagataaagattgatcagtttcgtctactcgaggatgggaacaaggcagctttttctcag
acggttcaacagcttttggatctgaaatcaaatggaaacaagtatcctcctgctctagac
ccaataaaagatttgaagctgaaagatgctgagcttgtggagacgtactataaatggacc
agcctgttgcaaaagatgtccgcgaataagtgccacggttgtgtcaaactggaagagcac
atgaagttagctagggagattaagaagcataagaaggatctcaaagatctagaatttcaa
atgtctgatgaagccctattacagatgcctgcgtttcagggccggatcgacgttctgaag
gaaattgggtgtatagatgaagacctcgttgttcaaatcaaaggccgtgtcgcttgcgag
atgaattctggggaagaattgatatgcacagtgtgtctgtttgagaatcaattcgaagaa
ttagaaccagaagaagcagtggctataatgtctgcctttgtcttccaacagaaaaacact
tcagcgccttcacttactcctaagctagctaaagctaaacaaagactctatgatacagca
atcagacttggtgaacttcaagctcagtacaacttgcaaatagaccctgaagaatatgcc
caggagaatctcaaatttggtctggttgaagttgtctatgaatgggcaaaggggactcca
ttcgcagagatatgtgaactgactgatgtccctgaaggtctgatagttcggaccattgtg
agattggacgaaacatgccgtgagttcaagaacgctgccgccattatggggaactcggca
ttacacaagaaaatggatatggcttcaaatgctataaaacgtgacattgtctttgcggct
agtctgtatgtgactggagtgtaa
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