Camelina sativa (false flax): 104781769
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Entry
104781769 CDS
T05044
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 2
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104781769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104781769
Enzymes [BR:
csat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104781769
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104781769
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104781769
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
FTP
Motif
Other DBs
NCBI-GeneID:
104781769
NCBI-ProteinID:
XP_010504813
UniProt:
A0ABM0YRG3
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All DBs
Position
4:complement(22111861..22115225)
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AA seq
602 aa
AA seq
DB search
MLSVIRVHLPSEIPIVGCELTPYVLVRRPDKNNATDDIPESSPLEGYFLRYRWYRVQSDK
KVTICSVHPTEQATLQCVFCSKRKALVAKSYHCSPKCFTDAWQHHRTLHERATAENGNEE
DELVRYNSAGAGALAGTLSGSMSNLNIANNGPAPFYPSNITQKNGGETFIEVGGCKTYTP
TADDIGYVLKFECVVANAETKQSVGHPSTILTSRVIPAPSPSPRKLIPVNGADVMGHLDQ
DGRIQSAGSFTVLSYNILSDTSASSDHYSYCPPWALSWPYRRQNLLREIVGYRADVVCLQ
EVQSDHFLDIFAPELDKHGYQALYKRKTNEVLSGSTNTIDGCATFFRRDRFSHVKKYDVE
FNKAAQSLTDALIPQAQKRTALNRLVKDNIALIVVLEAKFGNQPTDPSGKRQLICVANTH
VNVQQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNTPPGSAPHTLLVMGKVDPMH
PDLVVDPLNILRPHTKLTHQLPLVSAYSSLSLVRPGMGLGLEQHRRRMDLNTNEPLFTNC
TRDFIGTHDYIFYTADTLTVESLLELLDEERLRKDTALPSPEWSSNHIALLAEFRCKPRT
RR
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcgtgatccgagtgcatctaccttctgaaattcccattgtgggctgtgaattg
actccttacgttctcgttcgtcgccccgataagaacaacgccactgacgatatccctgaa
tcctctcctcttgaaggctacttcttgagataccgatggtaccgtgtacagagcgataag
aaagtaactatttgcagtgtgcatccaacggaacaagccactttgcaatgtgttttctgt
tctaagcgtaaagcccttgttgctaaaagctatcactgttcccctaaatgctttaccgat
gcctggcagcatcacaggactttgcacgagcgagctactgctgagaacggtaacgaggaa
gatgagttggtccggtataacagtgcgggtgctggggctctcgccgggaccttatctggg
tccatgtcaaatcttaatattgccaacaatggtccagctccgttttatccttctaatatc
actcagaaaaatggaggagagacgttcattgaggtcgggggttgcaaaacgtacactcca
acagctgatgatattggctacgttttgaagttcgagtgtgttgtggctaatgctgagact
aaacagtctgtgggacatcctagtaccattttgacttcacgagttattcctgctccttct
ccaagtccccgtaagctaatccctgttaacggagctgatgtcatggggcacttagatcaa
gatggtcggattcagtctgcaggatcattcactgttctttcatataacattctgtctgat
acttctgcaagtagcgaccactacagttactgtcctccttgggctctttcttggccatac
cgcagacagaatttgttaagggagattgttgggtatcgagccgatgtagtttgcctgcaa
gaagtacaaagtgatcatttccttgatatttttgctcctgagttggataagcatggctat
caagctctctacaagaggaagactaatgaggttctcagcggaagtacaaataccattgac
ggctgtgcaacatttttccgacgggatagattttcgcatgtcaagaaatatgatgttgaa
ttcaataaggctgctcaatccttgactgatgctctaatccctcaggcgcagaagagaact
gcattaaaccgactggttaaggataacattgcattgatagttgttcttgaagccaagttt
ggtaatcaacctactgatccttctgggaagcgccagcttatttgtgtggcaaacacacat
gtaaatgttcaacaagatctgaaggatgtgaaactctggcaggttcataccttattaaag
ggactggagaaaatagctgctagtgctgatattcccatgcttgtgtgtggagacttcaat
acgcctcccgggagtgctcctcatacacttcttgtaatgggaaaggtcgatccaatgcat
ccagatctggtagtagatccccttaatatcctgcgtccccacactaaattgactcatcaa
ttgcctctggtgagcgcgtactcatcgctatcgcttgttagaccgggaatgggtcttgga
ttggaacaacacagaaggagaatggatcttaatacaaacgagcctttgtttaccaattgt
acaagggacttcatcggcactcatgactacatattctacacagcggatacattaacggtg
gaatctctactggaattactggatgaagagagattaagaaaggacacagctcttccttcc
cccgaatggtcttctaatcacattgcactcttagctgaatttcgttgcaagcctaggacc
agacgctaa
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