Camelina sativa (false flax): 104782006
Help
Entry
104782006 CDS
T05044
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104782006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104782006
03012 Translation factors [BR:
csat03012
]
104782006
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104782006
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104782006
Translation factors [BR:
csat03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104782006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
T2SSE
NACHT
ATPase
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
104782006
NCBI-ProteinID:
XP_010505118
LinkDB
All DBs
Position
4:23228725..23235981
Genome browser
AA seq
1034 aa
AA seq
DB search
MQQVGSLSTLRFLLPYSSLKLSPLRPLFHIAAMPPYGPNSQGGRRGGGSSSGRGAGRRGG
GRGGGGGGRGGGGRGEQRWWDPVWRAERLRQQQVEMEVFDENEWWNKIEQWRTGGEQEML
IKRNFSRGDQQTLSDMAYQLGLYFHAYNKGKALVVSKVPLPDYRADLDDRHGSTQKEITM
STETERKLGSLLKTTQESGSSSSSTSAVQDQQDRTATLGLKRPDSASKLPDSLEKEKFSA
VLKERQEKLKATESVKALQAFREKLPAFRMKEGFLNSVSENQVLVVSGETGCGKTTQLPQ
FILEEEISSLRGADCNIICTQPRRISAISVASRISAERGEPIGESVGYQIRLESKRSDQT
RLLFCTTGVLLRRLIEDPNLTNVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILM
SATINADMFSTYFGNAPTMHIPGFTFPVAELFLEDVLEKSRYSIKSSDSGNYQGNSRGRR
RDSESKKDDLTTLFEDIDINVHYKSYSSATRLSLEAWSGAQIDVDLVEATLEHICRHEGD
GAILVFLTGWDEISKLLEKINGNRLLGDSSKFLILPLHGSMPTVNQREIFDRPPPNKRKI
VLATNIAESSITIDDVVYVVDCGKAKETSYDALNKVACLLPSWISKASAHQRRGRAGRVQ
AGVCYRLYPKVIYDSFPQYQLPEIIRTPLQELCLHIKSLQVGSIGSFLAKALQPPDALAV
ENAIELLKTIGALDDIEDLTPLGRHLCTLPVDPNIGKMLLIGAIFQCVNPALTIAAALAY
RSPFVLPLNRKEEADDAKRYFAGDSCSDHIALLKAYEGYRDAKRGGNEKDFCWQNFLSPV
TLRMMEDMRNQFLDLLSDIGFVDKSRPSAYNQYSQDMEMVSAVLCAGLYPNVVQCKRRGK
RTAFYTKELGKVDIHPGSVNARVNLFSLPYLVYSEKVKTTSVYIRDSTNISDYALLMFGG
NLIPSKTGEGIEMLGGYLHFSASKNVLELIQRLRGEVDKLLNKKIEDPSLDITVEGKGVV
SAVVELLRSRNIRY
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgcaacaagtagggtcgctctccacgcttcgattccttcttccttattcttctttaaaa
ctctctccgcttcgtcctctcttccatatcgccgccatgcctccttacggtcctaattct
caaggtggtcgtcgaggcggaggttcctcctccggtcgcggtgctggtcgtcgtggtggt
ggacgcggtggcggcggcggcggtcgtggcggcggcggtcgtggggaacagcgatggtgg
gatccggtgtggagagctgagcgtttgcgccagcaacaagttgagatggaagtttttgat
gagaatgaatggtggaacaagattgagcaatggagaacaggaggagaacaagagatgcta
attaagcgtaattttagcaggggagatcagcaaacactttctgatatggcttatcagctc
ggtctttacttccatgcatacaataaagggaaggctcttgtagttagcaaagttccttta
ccagattatcgggctgatcttgatgatcggcatggatctactcagaaagagattacaatg
tccacagagactgagagaaaacttggaagtcttttgaaaacaacacaagaatcagggtct
tcaagttcctctacttcagcggttcaagatcaacaggaccgtacagcaactcttggcttg
aaaagacctgattctgcttccaaattgcccgattctcttgagaaagaaaaattcagtgct
gtactcaaggaaaggcaggaaaagctaaaggcaactgagagtgtaaaagcacttcaagct
ttcagagaaaagctacctgcttttagaatgaaagaggggtttcttaattctgtttcagaa
aatcaggtattggtagtttcaggagagaccgggtgtggtaaaacaacacaacttcctcaa
tttatcttggaggaagaaatatcatccctaagaggtgctgattgcaacataatttgtaca
caacctcgacgtatttctgccatatcggttgcttcacgtatatctgctgaaaggggtgaa
cccattggtgaatctgtgggttatcagattcgtctagaatcaaagcgttctgatcaaaca
cgattgctattttgcactactggtgtcttactccggcggctgattgaggatcctaatcta
actaatgtaagccatttgcttgtggatgagattcacgagagaggcatgaatgaggatttc
ctactaatcatactacgtgatctccttcctcgacgcccagatttgcgtcttattctgatg
agtgctacgataaacgctgacatgttctcaacatatttcgggaacgctccaacgatgcat
atcccgggcttcacattccctgtggcagagttattcctagaagatgtgctggagaaaagt
cgctatagtattaagtcgtctgattcagggaattatcaaggcaattcgagaggtaggaga
agagactcagaatctaagaaagatgacctgactactctgtttgaggatattgatatcaat
gttcactataaaagttatagctccgccacaagactttctctcgaagcatggtctggtgca
cagattgatgtggatctggtggaggctacacttgaacatatttgccgtcatgaaggtgat
ggggcgattcttgtcttcctcactggctgggatgagatttcgaaactgcttgagaaaatc
aacgggaacagactgcttggagattctagcaagttcttaattcttcctctgcatggttca
atgccgacggttaatcaacgtgaaatttttgaccggccacctcctaataagcggaaaata
gttttggctacaaacattgccgagagtagtattacaattgatgatgttgtatatgttgtg
gattgcggtaaagcaaaggaaactagctatgatgctttgaacaaggtggcatgcctcttg
ccatcatggatttcaaaggcttcagcacaccagagacgaggtcgtgctggacgtgtccaa
gctggagtttgctacaggttgtatccaaaagtcatctatgattctttcccacagtatcag
ttaccagaaatcatacggactccactgcaagagttatgcctgcatatcaaaagtttgcag
gttggatccataggatcattcttggccaaggcattgcagccaccagatgcacttgctgtt
gagaatgctattgaacttctcaaaacaattggggctttagacgacattgaagatcttaca
ccccttggtcggcatctttgcactctaccggtagacccaaatataggaaagatgcttctg
attggagctatcttccagtgcgtcaatcctgctttgacaattgccgctgcgctggcatat
cgtagcccctttgtcttaccattaaataggaaagaagaagctgatgatgctaaaagatat
tttgctggtgattcctgcagtgatcacattgctctgcttaaggcatatgagggatatcgg
gatgcaaagcgtggtggaaacgaaaaagatttttgttggcaaaactttctttcccctgta
actctaaggatgatggaggatatgagaaaccagtttcttgatcttttatcagatataggt
tttgtagacaaatcaaggccaagtgcatataaccaatacagccaagacatggagatggta
agcgcggttttgtgtgcggggctgtacccaaatgttgtgcaatgcaaaagaagagggaag
cgcactgcattctacactaaagagttgggtaaagttgatattcaccctggatctgtcaac
gccagagtaaatctcttctcgttgccgtacttggtctacagcgaaaaggtgaagacgaca
agtgtatatatccgagactcaacaaacatatctgattatgcactccttatgtttggtggc
aatcttatcccaagcaaaaccggggaaggtatagagatgttgggagggtatctccatttc
tctgcctcgaagaacgtcttggaactgatacagagattgcggggagaggtggacaagctg
ctgaataagaagatagaggatccgagtttggacataactgtggaggggaaaggagtggtt
tcagctgtggtggagttgttacgtagccgaaacatcaggtattaa
DBGET
integrated database retrieval system
