Camelina sativa (false flax): 104782069
Help
Entry
104782069 CDS
T05044
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X2
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
csat
Camelina sativa (false flax)
Pathway
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104782069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104782069
03019 Messenger RNA biogenesis [BR:
csat03019
]
104782069
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104782069
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104782069
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
104782069
NCBI-ProteinID:
XP_010505196
UniProt:
A0ABM0YSE1
LinkDB
All DBs
Position
4:complement(23564418..23570605)
Genome browser
AA seq
980 aa
AA seq
DB search
MDNSRRPFDRSRDPGPMKKPRLSEEPIRPVNSNVRQFSSQRTLGTAAAAVTVPQPATSRF
RVSGRETESNIVSDPSREAYQPQPVHPHYELVNQYKSALAELTFNSKPIITNLTIIAGEN
VHAAKAVVSTICNNILEVPSDQKLPTLYLLDSIVKNIGRDYIKYFGARLPEVFVKAYRQV
DPPMHSNMRHLFGTWKGVFHPQTLQIIEKELGFNAKSDGSAAVVSTARGDPQSQRPPHSI
HVNPKYLERQRLQQSGRTKGMVTDVPEIEPNLTRDSDRLERVSSIASGGSWIGSAKVNTI
RRPSEPLYEKDIESIAGEYDYASDLSHNSRSVIKKVGSRVTDDGCEKQWYGAMSRGPDLI
SDQRDGLHTKSRTSNYGMARLENLETSGPSRNIGVPYDSWKNSEEEEFMWDMHSRLSETD
VATINPKNELHAPDESERLGSETHLIKRPRFSALDPRFDPVNSTNTYSNEQKDPSIFGHW
TPSPQSLHDSEVFSSINATSTAARKGIQPQPRIVGSGILPSPDRQSPLHDSTSKQNVTKQ
DVRRAHSLPQRDPRASRFPAKSQNVPRDDSVRLPSLSSQFKNANMRELPDASQVGIFDSK
SATENAPDLSIASEATGQSNMSDLLEAVMKSGILSINSTCGALKKSSQNEISPGVLAALS
AASKPKTLPIPVAGDNLLARLKVEQSSAPLVSCAASLTDITSVQTSEENSKAKENSKAAD
PLSCLLSSLVSKGLISASKKELPSPPSITQDYSPDHSTNSSLSVSVVPSDAQPSVSVKKG
PSTASKVKELVAPSETTKTEPKDLLGLKFRAYKIREVHPLVISSLFDDLPHLCTSCGIRL
KEKEELDRHLELHEKKKLELSGTNSKCRVWFPKVDDWIAAKSGELEPEYEEILSEPESAI
EDTPAVAADETQCACILCGEVFEDYFSQETAQWMFKGASYLTDSPANSEASGPIVHARCL
TTSSLQSLGVGNAIKQEIVE
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atggataattcgcgtaggccgtttgatagatctagagatccaggtccgatgaagaaaccc
aggctcagcgaggaaccaatccgacctgtaaattccaacgtgcggcagttttcgtctcag
agaacgcttggtacggctgcggcggcggtgacagtaccacaaccggcgacgtcgagattt
cgagttagtggcagagaaactgagagtaatattgtcagtgatccgagccgagaggcttac
cagccacagccggttcatccacattacgagcttgtgaaccagtacaagtcggcattggcc
gagctcactttcaactcgaagccaataataacaaaccttacgataatcgctggagagaat
gttcacgctgctaaagccgtcgtttccactatttgcaacaacatcctcgaggtaccaagt
gatcagaagctgccaacactgtacctgttagacagcattgtgaagaacatcggaagagat
tacattaagtactttggtgccaggctgcctgaggtatttgttaaggcttacaggcaagtt
gaccctcctatgcattctaatatgcggcatctctttggaacctggaaaggagtctttcat
ccgcaaacacttcaaattatagagaaagaacttggttttaatgctaaaagtgatggttca
gcagctgttgtatccacagccagaggtgatccgcaatctcagcgcccgccacatagcatc
catgtgaatcccaagtatctagaaaggcagcgccttcaacagtctggacggacaaaagga
atggttactgatgtccctgagatcgaacccaatttgactagggattcagatagactggag
agagtttcaagcatagcatctggaggctcgtggataggttcagctaaagtaaataccatt
cggcgacctagtgaacccctctacgagaaagatattgagtcaatagcaggggaatatgat
tacgcttctgatctatcccataactctagatcggtgattaagaaagtcggttcaagggtt
actgatgacggatgtgagaaacaatggtacggagctatgagcaggggtcctgatctgatt
tctgaccaaagggatgggttacatactaaaagcagaacttccaactatggtatggctaga
ctagaaaatttggaaacaagtggtcccagcagaaatataggtgtaccttatgatagttgg
aaaaactcggaggaagaagagtttatgtgggatatgcactcaaggttatcagaaactgat
gttgccactatcaacccaaagaatgagcttcatgcaccagatgaatcagagagactggga
tcggaaacccaccttattaaacgaccaaggttttcagctctggacccaaggttcgaccca
gtgaattcaacaaatacatattccaacgaacaaaaagatccaagtatttttggccactgg
acgccttctccacaatctttgcatgattcagaagttttttcttctatcaatgcaacctct
actgcagctagaaagggaattcagcctcaacctaggattgtcggctctggaattttgcca
agcccagatagacagtcgcctttacatgattcaacttctaaacagaatgtgaccaagcaa
gatgttagaagagctcattcccttcctcaacgtgatccaagggcttcccggtttccagca
aaatctcagaatgtccccagggatgactctgtacggctcccatctttaagtagtcagttt
aaaaacgcaaatatgcgtgaactacctgatgcatctcaagtgggaatatttgactctaag
tcagcaactgaaaatgcgccagacctttctattgcctctgaagctacaggacaatccaac
atgagtgatttgctggaagctgtcatgaagagtggaatcctttctattaattcaacttgt
ggtgcgctcaagaagagttctcagaatgagattagcccaggggtactagccgccctctca
gcagcctctaagccaaagactttgccaattccagttgctggtgacaatttattggctcgt
ttaaaagttgaacaatcctctgcaccacttgtctcatgtgcagcgtctcttactgacatc
acatcggtacaaacgtcagaagagaatagtaaggccaaagagaatagtaaggccgcagat
cctctttcatgcctcttgagctcattagtttcaaagggtttgatatctgcttcaaagaaa
gagctgccatcgcctccttccataacgcaggactatagtcctgatcattccaccaatagc
tctttgtctgtatctgtggtcccatcagatgctcagccatccgtttcggtgaaaaagggg
ccatctactgcctcaaaggtaaaagagttagttgcaccgtctgaaacaacaaaaactgaa
cccaaagacctcttaggattgaagtttagggcatacaaaatccgcgaagttcaccccttg
gtcattagtagtctctttgatgaccttccacatctctgcacctcctgcggcattcgcctt
aaagaaaaggaagaacttgataggcacctggagctgcatgaaaagaagaagctcgagctc
agtggcacaaacagtaaatgtagggtttggtttccaaaggttgatgactggatagcagca
aaatctggagagttagaacctgaatatgaggaaattctaagtgaacctgagagtgctatt
gaggatactccagccgtagctgctgatgagacccaatgcgcatgtatattatgtggagaa
gtgtttgaggattatttcagtcaagaaacggctcaatggatgttcaagggagcttcttac
ctgaccgattctccagccaacagtgaggccagtggtcctatcgtccatgcgcgttgtttg
accacgagttcattgcagagcttgggagttggaaatgcaatcaagcaggaaattgtcgag
tag
DBGET
integrated database retrieval system
