Camelina sativa (false flax): 104782378
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Entry
104782378 CDS
T05044
Name
(RefSeq) regulator of nonsense transcripts UPF2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
csat
Camelina sativa (false flax)
Pathway
csat03013
Nucleocytoplasmic transport
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104782378
03015 mRNA surveillance pathway
104782378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104782378
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104782378
mRNA cycle factors
P-body specific factors
104782378
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Glycos_transf_N
LRR_R13L1-DRL21
O-antigen_lig
Motif
Other DBs
NCBI-GeneID:
104782378
NCBI-ProteinID:
XP_010505592
UniProt:
A0ABM0YTE0
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Position
4
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AA seq
1175 aa
AA seq
DB search
MDHPEDEIHNSEKQDDEEALARIEEIKKSIEAKMTLRQNNLNPERPDTAYLRTLDSSIKR
NTAVIKKLKQINEELREGLMDDLRGVNLSKFVSEAVTAICEAKLRSSDIQAAVQICSLLH
QRYKEFSPSLTQGLLKVFFPGKSTEDLEADKNSKAMKKRSTLKLLLELYYVGVIEDSNIF
INIIKDLTSVEQLKDRDTTQTNLTLLASFARQGRVFLGLPISGQDEDFFKGLGVTADQKK
SFKKAFNTYYDALADLLQSEHKLLHQMEKDNAKLVNAKGELSEDSASSYEKLRKSYDHLY
RNISSLAESLDMQPPLMPEDGTTRLTAGDEASPSGAVKDTSAPEPIWDDEDTKTFYECLP
DLRAFVPAVLLGEAESKSSEQSAKAKDKSSESSSEIVESQQTTEDTITEVPADCGSMADG
SNTEQPKEKEEVDKEKAKDTKKEKGKEKDSEKKLENEKEKGKSLDVANFERLLQRLPGCV
SRDLIDQLTVEYCYLNSKTNRKKLVKALFNVPRTSLELLGYYSRMVATLATCMKDIPSML
VQMLEDEFNSLVHKKDQMNIETKIRNIRFIGELCKFKIVPAGLVFSCLKACLDEFTHHNI
DVACHLLETCGRFLYRSPETSLRMTNMLDILMRLKNVKNLDPRQSTLIENAYYLCKPPER
SARVSKVRPPLHQYIRKLLFSDLDKESIVNVLKQLRKLPWSECEQYILKCFMKVHKGKYG
QIHLIASLTSGLSRHHDEFAVAVVDEVLEEIRVGLELNEYGAQQKRLAHMRFLGELYNYE
HVDSSVIFETLYLTLLYGHDTSEQEVLDPPEDFFRIRMVIILLETCGHYFDRGSSKKRLD
QFLIHFQRYILSKGHLPLDIEFDLQDLFANLRPSMTRYATIEEVNAAILQLEEREHYSSG
DKVSVERHSETKPPSRSSSVVKDIGENGEAHGEESDSDSGSGSVVRDGQNEELDDGNHDR
GSESDDGDDYDDGDGPGSDDDNEFRVRQKVVTVDPEELADFDQELKALLQESMEQRKLEL
RGRPALNMTIPMSVFEGSGKDHHFGRLVGENGEELLDEENGEQREVQVKVLVKRGNKQQT
RQMLIPSDCSLVQSTKQKEAAELEEKQDIKRLVLEYNERDEEEANGLGTQILNWIPGGGR
GSTRGTGEGSGNRGGSRHRFYYHQGGGGSYHARRK
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggatcatccagaagatgaaatccacaacagcgagaaacaagacgacgaggaagctctt
gctcggattgaagagattaagaagtcaattgaagctaaaatgactcttcgtcaaaataac
ctcaatcctgaacgacctgatacggcatatcttaggactcttgattctagtattaagcgg
aatacagcagttatcaagaagttaaagcagattaatgaggagttgcgagaagggttgatg
gatgatctgcgaggtgttaatcttagcaagtttgttagtgaagctgttactgccatctgt
gaggctaagcttagaagctctgatattcaagctgctgttcagatttgctcgctacttcat
cagaggtataaagaattttctcctagtctaacacaagggctcttgaaagtcttctttcct
ggaaaatctaccgaagatttagaagcggataaaaactcaaaggccatgaaaaagcgcagt
accctaaaacttcttctggagctttactatgttggagtaattgaagatagtaacatcttt
attaatattattaaggatcttaccagtgttgaacaactgaaagacagagatacgacccaa
acaaatctgacacttcttgccagttttgctcggcaaggaagagtttttctggggcttcct
atttctggacaagacgaagattttttcaagggtctcggcgtaactgctgatcagaaaaag
agttttaagaaagctttcaacacatattatgatgctcttgcagatctccttcagtctgaa
cacaagttacttcaccaaatggagaaggacaatgcaaaactggtaaatgctaaaggggag
cttagtgaagacagtgcatcttcgtatgaaaagctgaggaaatcatatgaccatctttat
cgaaatatctcatctttggccgaatcacttgatatgcagcctcctcttatgccagaggat
ggtacaactaggctcacagcaggggacgaagcctcaccctctggtgctgtaaaagataca
tctgccccagaacctatttgggacgacgaagacactaagacattttacgagtgcttgcct
gatctgagggcatttgttcccgcagtattattgggagaagcagaatctaaatcaagcgag
caatctgctaaagcaaaagataaatcatctgagtctagctctgaaattgtcgaaagtcaa
caaacaactgaagacacaataacagaggttcctgctgattgtggtagtatggctgatgga
tcaaatactgagcagccaaaagagaaggaagaagtagataaggaaaaggctaaagatact
aagaaggaaaaagggaaagaaaaggatagtgagaaaaaattggaaaatgagaaggagaaa
ggtaagagtcttgacgtggcaaacttcgaaagattgttacaacgactacctggttgcgta
agccgtgatcttattgaccaattaacggtggaatattgttatttgaattccaagacaaac
agaaaaaaacttgtcaaagcgctatttaatgtccctaggacatctctggagttgctagga
tactattcgcgtatggttgcaacactagcaacgtgcatgaaggatatcccgtctatgctt
gtgcagatgttggaggacgagtttaattctctggtccataaaaaggaccaaatgaatatc
gaaacaaaaatccgaaacatcagatttattggagaactctgcaagtttaaaattgtacct
gctggacttgtattcagttgtttaaaggcttgcttagatgaattcactcatcataacatt
gatgttgcttgccatcttctggagacatgtggccgtttcctttatcgatctcccgaaacc
tcactcaggatgacaaatatgctggacatattgatgcgcctgaaaaatgtcaagaattta
gatcctcgccaaagcactcttatagaaaatgcctactacctttgtaaacctcctgaaaga
tcagcaagagtttctaaagttcgtccaccattgcatcagtatattcgaaaactgctattc
tcggatcttgataaagaatccattgtgaacgttctgaagcaactgcggaagctgccttgg
agtgaatgtgagcaatacatcttaaagtgctttatgaaggttcacaagggaaagtatggt
cagattcacttaattgcttccttgacttctggtttgagccgccatcatgatgagtttgca
gtggctgttgttgatgaggtcctggaggagataagggttgggcttgagttgaatgaatat
ggagcacaacagaagcgactagcccatatgagatttttaggggagctgtacaattatgag
cacgtagattcatctgtgatattcgagacgctttatttaactcttttatatggtcatgat
acttcagagcaagaggtgctggatccaccggaagattttttccgtatcaggatggttatc
attcttctggaaacctgtgggcactactttgatcgaggttcatcaaagaaaaggcttgat
caatttttgatacacttccagagatacatactcagcaagggtcaccttcccctggatatt
gaatttgacttgcaggatctatttgccaatttgagacccagtatgacccgttacgcaacc
attgaggaagtcaatgcagctatactgcagctggaagagcgtgaacattattcttcagga
gacaaagtcagtgtagaaagacactcagaaacaaagcctccaagtaggtcatcgtcagtt
gtaaaagatattggagagaatggagaagctcacggagaagaaagcgacagtgattctggt
agtggctccgtggtccgagatggacagaacgaagagttggatgatggaaatcatgaccgg
ggatctgagagtgacgatggggatgactatgatgatggagatggacctggatctgatgat
gataacgaatttcgtgttaggcaaaaggtggtgactgtagatcctgaggaactagcagac
tttgatcaagaactgaaggctttacttcaggagagcatggagcaaaggaagctagaatta
cgtggtagaccggcattgaacatgacaataccgatgagtgtttttgaagggtctggaaaa
gatcatcattttgggcggttagtaggtgaaaatggagaagaattgttggatgaagagaac
ggagagcaaagagaggttcaagtgaaggtcctggtgaagagagggaacaaacaacaaaca
aggcaaatgctaatcccgagtgattgttcgctagtgcagagcacaaaacagaaagaagct
gcggaattggaagagaaacaagacataaagaggttagtactcgagtacaatgagagggat
gaagaggaagcgaatgggttagggacgcagatattgaattggattcctggaggaggcaga
ggatccactcgaggtactggggaaggcagtgggaatcgcggcgggtctcgtcaccggttt
tattatcatcaaggaggtggcggttcgtatcatgcccgtcgaaagtaa
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