Camelina sativa (false flax): 104782727
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Entry
104782727 CDS
T05044
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH13
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104782727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104782727
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104782727
Spliceosome [BR:
csat03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104782727
Complex C
U5 SnRNP specific factors
104782727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_11
Motif
Other DBs
NCBI-GeneID:
104782727
NCBI-ProteinID:
XP_019100572
UniProt:
A0ABM1RNI4
LinkDB
All DBs
Position
4:27057869..27064572
Genome browser
AA seq
2123 aa
AA seq
DB search
MASFGGGDMNESSGEPESLRGRIDPKSFGDRVVKGKPLNKSKKKKERDVDDLVSAREGKR
RRLREVSVLTDTDDGGVYQPKTKETRAAFEFMLGLIQIQLGGQPLNVVCGAADEILAVLK
NDSLKSHEKKMEIEKLLNVISDQDFNQFVTVGKIITDYQEVGDSLIGYASEDDVGVALEF
EEDDKEERDLQEEEEDDEEDEDAVEPNKSGGSQVDARHGKEDTSLNVQDIDAYWLQRKIS
QEYEQKIDAQECQKLAQELLNILAEGSDRDVEIKLLEHLQFEKFTLAKFLLQNRLKIVWC
TRWSRARDQMERNQIEEEMTGLGPELAAIVEELHVKRATAKEREEKRERDIKEEARLLKD
NHSGGDGDRSMKNVDLENGWLKGQRQVLDLESLAFNQGGFMRQNKNCELPDRSYRVRGKE
FDEVHVPWVSKKVDSNEKLVKISDMPDWAQPAFRGMQQLNRVQSKVYGTALFKAENILLC
APTGAGKTNVAVLTILHQLALNMNPDGTFNHGNYKIVYVAPMKALVAEVVDNLSERLKDY
GVTVKELSGDQSLTGHEIKETQIIVTTPEKWDIVTRKSGDRTYTQLVRLLIIDEIHLLND
SRGPVLESIVARTLRQIETTKEHIRLVGLSATLPNDEDVALFLRVDLKSGLFKFDRSYRP
VPLEQQYVGINVKKPLRKFQLMNEICYQKVLAGAGKHQVLIFVHSRKETAKTARAIRDTA
MANDTLSRFLKEDSQSYEILQSLVGLLKNSDLKELLPYGFAIHHAGLTRTDRQIVEDQFR
LGNLQVLISTATLAWGVNLPAHTVIIKGTQVYNPERGAWMELSPLDVMQMIGRAGRPQYD
QRGEGIIITGYSELQYYLRLMNEQLPIESQFISKLADQLNAEIVLGTVQNAKEACHWLGY
TYLYIRMVRNPTLYGLPPDALAKDVLLEERRADLIHSAANILDKNNLIKYDRKSGHFQVT
DLGRIASYYYITHGTIATYNENMKPTMSDIELCRLFSLSEEFKYVTVRQDEKMELAKLLD
RVPIPVKETLEDSDAKINVLLQVYISKLKLEGLSLSSDMVYITQSAGRLLRAIFEISLKR
GWAQLSEKALNLSKMVGKRMWNVQTPLRQFLEIPKEVLMKLDKNDLVWERYYDLSSQELG
ELIRNPKMGRKIHKFIHQFPKLNLRAHVQPISRSVLQVELTVTPDFQWDDKLHQNVEPFL
IMVEDSDGEKILHYEYFLLKKQYIDDDHTLNFTVPISEPVPPQYFIRVVSDKWLDSPTVL
PISFRYLILPEKYPPPTELLDLQPLPVMALGNPSYETLYQDFKHFNPVQTQVFTVLYNTS
DNVLVAAPTGSGKTICAEFAILRNHLERPDSVMRVVYIAPLEGIAKERFCDWEKKFGKGL
GLRVVELTGETVLDLTLLEKGQIIISTPERWDALSRRWNHRKYIQQVSLFIVDELHLIGG
QGGPVLEVIVSRMKYISSQVGNKMRIVALSTSLANAKDLGEWVGASSCGIFNFPPNIRPV
PLEIHIQGVDILSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVSTRKHVRLTAVDLTAYS
HMDNMQNPEFLLGKLEELEPFVNQICEETLKETLRHGIGYLHEGLSSIDQEIVTQLFEAG
RIQVCVMSSSLCWGTPLKAHLVVVMGTQFYDGRENSHSDYPISELLQMMGRASRPLLDDT
GKCVVFCHSSRKEFYKKFLYEAIPVESQFQHFLHDNFNAEVHSGVIENKQEAVDYLTWSF
MYRRLPQNPNYYNLQGVTHRHLSDHLSELVETTLSDLEVSKCIDIENELDLFPLNLGIIA
SYYYINYTTIERFSSLLASKTKMKGLIEILASASEYDLIPIRPGEEDAVRRLINHQRFSF
ENPKCTDPHVKANALLQAHFSRQKISENLAMDQREVLLSATRLLNAMVDVISSKNCLNLA
LLAMEVSQMVTQGMWNRDSILLQLPHFTKDLAKRCQENPGNNIETVFDLLEMEDDKRQEL
LQMSDAQLLDIARFCNRFPNIDLTYEIVGGNEVSPGKEITLQVMLERDMEERTEVGPVNA
PRYPKIKEEGWWLVVGETKTNQLMAIKKTPLQRKAEVKLEFAVPAEPGKKSYTLYFMCYS
YLGCDQEYSFTVDVKDFADQMEE
NT seq
6372 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtttcggtggtggtgatatgaatgaatcttctggagaaccggagagtctcagg
ggaaggattgatcctaaatcctttggtgatcgtgttgttaaggggaagcctctgaacaaa
tctaagaagaagaaggagcgtgatgttgatgatttggtatctgctcgtgagggtaagaga
cgtcgtcttagggaggtgagtgtgctaactgatacagatgatggtggtgtttatcagccc
aagactaaggagacgagggctgcttttgagtttatgcttggtcttattcaaattcaattg
ggtgggcagcctctgaatgttgtttgtggtgcggctgatgagattttggctgttctcaag
aacgattccctcaaaagccatgagaagaagatggagatcgagaaactactgaacgttatt
tctgatcaagatttcaaccagtttgttacggttgggaaaattattacggattatcaagag
gttggtgattctttaattggctatgctagtgaggatgatgttggtgtcgctcttgagttc
gaagaagatgataaggaggagagggatctgcaggaggaagaagaagatgatgaggaggat
gaagatgctgttgaacctaacaaaagtggaggttcccaggtggatgcaagacatggaaag
gaggacacaagtcttaatgttcaggacattgatgcctactggctacagagaaagatatct
caagaatatgagcagaagattgatgcacaagagtgccaaaaactcgcacaagagctgctt
aatatacttgctgagggtagtgatagggatgttgagatcaagctgcttgagcaccttcag
tttgaaaagttcactcttgctaaatttctgctgcaaaaccgtctgaaaattgtgtggtgc
acccgttggtctagggcaagagaccagatggagaggaatcaaattgaggaggagatgacg
gggttgggaccagagttggcagcgattgtggaggagttgcatgtaaaaagagcaacagcc
aaagaaagggaggagaaacgggagagagatatcaaagaagaggctcgacttcttaaggat
aatcattctggtggtgatggagacagaagcatgaaaaatgttgatttagagaatggttgg
ttgaagggtcagcgtcaggtgctggacctggagagccttgcttttaaccaaggtggtttc
atgaggcagaataagaattgtgagcttcccgatcgctcttacagagttcgtggcaaggaa
tttgatgaggttcatgtgccatgggtttctaaaaaggttgatagtaatgaaaagcttgtg
aaaataagcgatatgccagattgggcccaaccagcttttaggggaatgcagcagttgaac
agggttcagagcaaagtgtatgggactgctctttttaaggcagagaacattcttctttgt
gctccaactggtgcggggaagaccaatgttgctgtgctcaccatattgcaccagcttgca
ttgaatatgaatccagatggaacatttaatcatgggaattacaaaatcgtctatgttgca
cctatgaaagccctcgttgctgaggttgtggataatctatctgagcgcttgaaggattat
ggagttacggtgaaggaactcagtggggatcagtcccttactgggcatgaaatcaaagag
actcagataattgttacaacgccagagaagtgggatattgtcaccaggaaatcgggagat
cgaacttatactcagcttgtgagacttcttataattgacgaaattcatcttctcaatgac
agtcgagggcctgtgcttgaaagtattgttgctagaacgcttaggcagattgaaaccaca
aaggagcatattcgtctggtgggtttatcggcaacactgccaaatgatgaagatgtggcg
ttgtttttgcgggtggatcttaaaagtgggttgtttaaatttgaccgcagctacagacct
gtgcctcttgagcagcagtatgtaggaattaatgtgaaaaaaccgttacggaagttccaa
ttgatgaatgagatttgttatcagaaagtattagctggtgctgggaaacatcaagtcctt
atttttgtccattccaggaaggaaacagcaaaaactgctagagcaatacgggacaccgca
atggcaaatgataccctcagcagattcttgaaggaagatagtcaaagttatgaaattctt
cagagtctggttggacttctcaagaatagtgacctgaaagagcttctgccttatggattt
gcaattcatcatgctgggttgacaaggactgatcgccagatagttgaggatcaatttcgt
ttaggaaatttgcaagtgctgatttccacggcaactcttgcctggggtgtgaatttgcct
gctcatactgtcattatcaaaggaacccaagtctataatcctgagagaggggcgtggatg
gagttgagtcctctagatgttatgcagatgattggtcgtgccggaagacctcaatatgac
caacgtggggagggaatcataatcactggatacagcgagctgcagtattatcttcgtttg
atgaatgagcaactaccaattgaaagccagtttatctccaaacttgctgatcagctcaat
gctgaaattgtgcttgggacagttcagaatgctaaagaagcttgccactggcttggctat
acatatttatacatccgtatggttcgtaatccgacactgtatggcttaccgcctgatgcc
cttgcaaaagacgtattattagaggagagaagagctgacctgatacattctgctgctaat
atcttggacaagaacaacctgattaagtatgacaggaaaagtggacacttccaggttact
gatttgggacgcattgctagctactactacataacccatggaacaatagctacatataat
gagaatatgaagccaacaatgagtgatatagagctttgccgtctgttctcactgagtgag
gagttcaagtatgtcactgttcgacaagacgagaagatggaactggcaaaacttctggat
cgtgtaccgatccctgtcaaggaaacactagaagattctgatgcaaagatcaatgttttg
ctgcaagtatatatttcaaagctaaagctcgagggtctttctttgtcatctgatatggtt
tatattacccagagtgctggacgtctcctacgagctatttttgagattagtttgaagagg
gggtgggctcaactgtctgaaaaagctcttaacttgtctaaaatggtagggaagaggatg
tggaatgttcagacaccactccggcagtttcttgaaattccaaaggaggttctgatgaag
ttggacaagaatgatctggtgtgggagagatactatgatctatcttcacaggagttagga
gagcttattcgtaatcctaagatgggcagaaaaattcacaagttcatccatcagtttcca
aaactgaatcttagagcacatgttcagccgatttctcgttctgttctacaagtggagctc
accgtaacacctgattttcagtgggatgacaaattacatcaaaatgttgaaccatttttg
ataatggtggaagacagtgatggtgaaaagatacttcattacgagtatttccttttgaaa
aagcagtatattgatgacgaccacacgttgaacttcactgtaccaatctctgagccagtt
cccccacagtatttcattcgagtggtttcagacaaatggcttgactcgccgactgtgtta
cctatatctttcaggtatcttattcttccagaaaagtatccaccacctacggagctactg
gacttgcagcccctcccggtgatggccctagggaacccgtcctatgaaactttgtatcag
gatttcaagcatttcaatccagtgcagactcaggtctttactgttttgtataacacaagt
gacaatgtattggttgctgctcccacaggaagtgggaagactatatgtgcggagtttgct
atattgaggaatcatcttgaaagacctgattctgtaatgcgtgttgtctatattgcacct
cttgagggtattgctaaggaaaggttttgtgattgggagaaaaagttcggaaaggggctt
ggtttacgggttgttgagttaactggggagacggtattagatcttactctgcttgagaag
ggtcagataattataagtactcctgagagatgggacgctctgtcccgaaggtggaatcac
agaaaatatattcagcaggttagtttgttcatcgttgatgagcttcatttaattgggggt
caaggtggtccagtattggaggtaattgtctcaagaatgaaatatatttcaagtcaggtc
gggaacaagatgaggattgttgcattatcaacttcccttgcaaatgccaaagatcttggg
gagtgggttggggccagttcatgtggcattttcaattttccgcctaatattcgccctgtc
ccactggagatccacattcaaggggtggacatattgagttttgaagcgagaatgcaggcg
atgactaagccaacatacactgccatagtccagcatgccaagaacaagaaaccggctatc
gtttttgtctcgacccgtaaacatgtccgccttactgctgtggatctgacagcatactca
cacatggacaacatgcagaaccctgagttcctgttaggaaagctggaagaactagagcct
tttgttaaccaaatttgcgaggaaactctgaaggagactttgcgccatggtattggctac
ttacatgagggtttaagcagtattgatcaggagattgtgactcagctttttgaagcagga
cggattcaggtgtgtgtaatgtctagttcattgtgttggggtactccattgaaggcgcat
ttggttgttgtaatgggaacacaattctatgatggacgggaaaattctcattcggattac
cccatctccgagctgctccagatgatggggcgtgctagccgacctctgcttgatgacact
gggaagtgtgtggtcttctgccattcatcacgtaaagagttttacaagaaatttctgtat
gaagccattccagttgagagtcagtttcaacatttcttgcatgataatttcaatgcagaa
gttcattccggagttatagaaaacaagcaagaggctgtggattatcttacctggagcttc
atgtacaggaggcttccccagaaccctaactactacaatctccagggagtgacccacagg
catttatctgatcacctctcagagctcgttgaaaccactttgtctgatcttgaagtgagt
aaatgcatagatatagagaatgagttggatctgtttcctctcaatcttggtatcattgct
tcatattattacatcaattacacaaccattgagcgattcagttctctcttggcttccaag
accaagatgaagggtcttattgagatcttggcttcagcttcagagtatgacttgattcct
atacgtcctggtgaagaggacgcagttaggagactcatcaatcaccagaggttctcgttt
gaaaacccgaaatgcacagaccctcatgtgaaggcaaacgcgcttcttcaggcgcatttt
tcaaggcaaaaaatcagcgagaacctggcaatggatcagcgtgaggtcctcctatctgca
actagacttcttaatgcaatggtcgatgtgatatcgagcaaaaattgtctgaatcttgct
ctgttagctatggaagtaagccagatggtgactcaaggcatgtggaatcgagactccata
cttctgcagcttcctcacttcacaaaggacttagccaaaaggtgccaagagaatccgggg
aataacatcgaaaccgtttttgatcttctggaaatggaagacgacaaacgccaagagctt
ctccaaatgtcagacgctcagcttcttgacattgccaggttctgcaaccgcttccccaac
attgaccttacatacgagattgtgggcggcaacgaggtaagccctggaaaagagatcaca
ttgcaggtaatgctggagagagacatggaggaaaggacagaggtgggacctgtgaacgca
ccaagatatcccaagattaaagaagaaggttggtggctagtcgttggagaaaccaagaca
aaccagctgatggccatcaagaaaacccctctgcaacggaaggcggaggtgaagttggag
tttgcagtaccagccgaaccaggaaagaagtcgtatactctctacttcatgtgctattct
tacttgggttgtgaccaggagtactctttcactgttgatgtcaaagattttgcagatcag
atggaagaatga
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integrated database retrieval system
