Camelina sativa (false flax): 104783156
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Entry
104783156 CDS
T05044
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104783156
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104783156
03036 Chromosome and associated proteins [BR:
csat03036
]
104783156
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104783156
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
104783156
mRNA degradation factors
5'-3' decay
Decapping complex
104783156
Chromosome and associated proteins [BR:
csat03036
]
Eukaryotic type
Gene silencing
piRNA pathway
104783156
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
104783156
NCBI-ProteinID:
XP_010506559
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All DBs
Position
4:29028443..29031775
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AA seq
520 aa
AA seq
DB search
MNNNNSNNRGRFPPGIGAAGPNFQSRTPNPNPPPPQPQEYLQSRSPFPQQSQTQPPQYLQ
SQPDAHQFVQRSYPQTNPQQIQQPQQQWSGGRAQLPSDPSYVDEVEKTVQSEANNDSNTQ
DWKATLKLPPRDDRYQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIA
LTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKY
LNIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLSKKGVCVLKDCTMLVMDEADKL
LSVEFQPSIEELIQFLPENRQILMFSATFPVTVKSFKDRYLRKPYIINLMDQLTLVGVTQ
YYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQD
HRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRYGHL
GLAVNLVTYEDRFKMYQTEQELGTEIKPIPSLIDKAIYCQ
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgaataataataatagtaacaatagaggaagatttcctccggggattggagcggcgggt
cctaattttcaatcacggactccgaatcctaacccgcctccgcctcagcctcaagagtac
cttcagtcacgttctccgtttccgcagcaatctcaaactcagcctccacagtatctccag
tctcaacctgatgctcaccagttcgttcaacggtcttacccacagaccaatcctcaacag
attcaacagccacaacaacaatggtctggaggacgcgctcagcttcctagtgatccgagt
tacgtagatgaagttgagaagacggttcaatctgaagctaacaacgattctaatacccaa
gactggaaggcaaccttaaagctgcctccgcgagatgatcgttaccagacagaggatgtg
actgccaccaaaggaaatgaatttgaagattactttttgaagagagatctgcttagagga
atttacgagaaaggttttgaaaagccttcacctattcaggaagaaagcattcctattgct
ttgactggcagtgatattctcgctagagccaaaaacgggacaggcaagactggtgccttt
tgcattccgacccttgagaaaattgatccagagaacaatgtcattcaagctgtaattcta
gttccaacccgagagcttgcccttcagacatcacaggtttgtaaggagctttccaaatat
ctaaacattgaggttatggtcaccactggtggtaccagtctgagagatgatatcatgcgt
ttatatcaacctgtacacttgctggttggaactcctggaagaatattagatctttccaaa
aagggtgtgtgtgttttgaaagattgtaccatgcttgtaatggacgaggccgacaagctt
ttgtctgtagaatttcaaccttccatagaggagttgatacagttcttgccagaaaaccgt
cagattctgatgttttcggctacatttcctgtcactgtgaagtccttcaaggatcgatat
ctcaggaagccttacattatcaatctcatggatcagctcacacttgtaggtgttacccaa
tattatgcttttgttgaagagagacagaaggtgcactgtctgaatacactattctctaag
ctccaaataaaccaatcgattatcttttgcaactctgttaatcgtgtggagctgttggcc
aagaaaatcacagaactcggttactcatgcttctatatccatgctaaaatggttcaagat
catcggaacagggttttccatgattttcgcaatggtgcttgcagaaaccttgtttgcact
gatttgtttacacgtgggattgacattcaagctgtgaatgttgtcataaattttgatttt
cctaggacttctgagtcctatctacacagggtaggcagatcgggacgatatggacacctt
ggtttggctgtgaatttggtaacttatgaggatcgcttcaaaatgtatcaaactgagcaa
gaacttggaactgaaatcaagccaataccttcacttatcgacaaggcaatctactgtcag
taa
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