KEGG   Camelina sativa (false flax): 104784107
Entry
104784107         CDS       T05044                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
csat  Camelina sativa (false flax)
Pathway
csat03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104784107
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csat03041]
    104784107
Spliceosome [BR:csat03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    104784107
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Gbeta Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_1st Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_1st NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_EML Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_EIPR1 ANAPC4_WD40 PRP4 Beta-prop_RIG_2nd Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_WDR19_1st WD_LRWD1 Beta-prop_DCAF4 Beta-prop_SPT8 WD40_like
Other DBs
NCBI-GeneID: 104784107
NCBI-ProteinID: XP_010507476
UniProt: A0ABM0YXJ8
LinkDB
Position
4:complement(20852550..20853913)
AA seq 436 aa
MDPNTMQDLLVMRRTAVPTNDKAVRDRLRRLGKPITLFGEQGMERRSRLSNLMGSLSVDK
LLETHVEEEDAAPKEQVYDDQVSIYPFFTEGPKELREARIEIAKFSIKRAAVRNQRAKRL
RDEESKWALKHAKDMVLDCSNFGDDRPLTGCSFSRDGKILATCSLSGVTNLREMRQVTNK
IAVLEDNKERATDVVFSPVDDDCLATASADRTAKLWKTDGTLVQTFEGHLDRLARVAFHP
SGRYLGTTSFDKTWRLWDINTGAELLLQEGHSHGVCGIAFQQDGALAASCGLDSLARVWD
LRTGRSILVFQGKTKPLLSVYFSPNGYHLASGGEDNQCRIWDLRMRESLYTIAAHSNLVS
QVKYEPQAGHFLATASYDMNVNIWSGRDFSLVKSLAGHESKVASLDITPDSSCIATVSHD
RTIKIWTSSGNGEDES
NT seq 1311 nt   +upstreamnt  +downstreamnt
atggatcccaacacaatgcaagatttgttggtaatgcgtcgtactgctgttccaacgaat
gacaaagctgttagggatcgccttagacgacttgggaagccaattactctgtttggagaa
caaggaatggagagaagatctaggttgagtaaccttatgggtagccttagtgtagataaa
ctacttgaaacgcacgtcgaagaagaagatgcggctccaaaagagcaagtgtatgatgat
caagtatctatatacccgttttttaccgagggtccaaaggaacttagagaggctagaata
gagattgccaagttttctatcaagagagcagctgtcaggaaccagcgtgcaaagcggctg
agggatgaagagtctaagtgggctttaaagcatgctaaagacatggtcctggattgcagt
aactttggagatgatcgtcctcttaccggctgctccttctctcgcgatggaaagatactt
gccacatgttctctgagtggggttactaatttgagggagatgcgtcaagttacaaacaag
attgctgtcttggaggacaataaggaacgtgcaactgatgtagtgttctcccctgtggat
gacgactgtctagcaactgcttctgctgatcgaactgcaaagctgtggaaaactgatgga
acactagtacaaacttttgaaggtcatttggatcgtcttgcacgcgttgccttccaccca
tcagggagatacctaggaacaaccagctttgacaaaacatggagattgtgggatataaac
acaggtgcagagctgctcttgcaagaaggtcacagtcacggtgtctgtggaattgcattt
caacaagatggagcattagcagcttcttgtgggcttgattcactcgcacgggtttgggat
ctccgcactggtaggagtattcttgtcttccaaggaaaaaccaaacctctactctcagtg
tacttctctcctaatggttatcacttggcatctggtggtgaggataatcaatgccgtata
tgggatttaaggatgagagagtcattgtacactatagcagctcattctaaccttgtgtct
caagtgaagtatgaaccacaagcaggtcacttcctggccactgcctcctacgacatgaat
gtcaacatatggtcgggaagagatttctcgctcgttaaaagcttagcagggcatgagtca
aaagtcgcctctctcgatatcactccagatagctcgtgtattgctactgtatcacatgac
cgcaccatcaagatttggacgagcagtggaaatggcgaagatgaatcataa

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