Camelina sativa (false flax): 104784107
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Entry
104784107 CDS
T05044
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104784107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104784107
Spliceosome [BR:
csat03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
104784107
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Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
NBCH_WD40
PRP4
ANAPC4_WD40
WD40_like
Motif
Other DBs
NCBI-GeneID:
104784107
NCBI-ProteinID:
XP_010507476
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Position
4:complement(20852550..20853913)
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AA seq
436 aa
AA seq
DB search
MDPNTMQDLLVMRRTAVPTNDKAVRDRLRRLGKPITLFGEQGMERRSRLSNLMGSLSVDK
LLETHVEEEDAAPKEQVYDDQVSIYPFFTEGPKELREARIEIAKFSIKRAAVRNQRAKRL
RDEESKWALKHAKDMVLDCSNFGDDRPLTGCSFSRDGKILATCSLSGVTNLREMRQVTNK
IAVLEDNKERATDVVFSPVDDDCLATASADRTAKLWKTDGTLVQTFEGHLDRLARVAFHP
SGRYLGTTSFDKTWRLWDINTGAELLLQEGHSHGVCGIAFQQDGALAASCGLDSLARVWD
LRTGRSILVFQGKTKPLLSVYFSPNGYHLASGGEDNQCRIWDLRMRESLYTIAAHSNLVS
QVKYEPQAGHFLATASYDMNVNIWSGRDFSLVKSLAGHESKVASLDITPDSSCIATVSHD
RTIKIWTSSGNGEDES
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggatcccaacacaatgcaagatttgttggtaatgcgtcgtactgctgttccaacgaat
gacaaagctgttagggatcgccttagacgacttgggaagccaattactctgtttggagaa
caaggaatggagagaagatctaggttgagtaaccttatgggtagccttagtgtagataaa
ctacttgaaacgcacgtcgaagaagaagatgcggctccaaaagagcaagtgtatgatgat
caagtatctatatacccgttttttaccgagggtccaaaggaacttagagaggctagaata
gagattgccaagttttctatcaagagagcagctgtcaggaaccagcgtgcaaagcggctg
agggatgaagagtctaagtgggctttaaagcatgctaaagacatggtcctggattgcagt
aactttggagatgatcgtcctcttaccggctgctccttctctcgcgatggaaagatactt
gccacatgttctctgagtggggttactaatttgagggagatgcgtcaagttacaaacaag
attgctgtcttggaggacaataaggaacgtgcaactgatgtagtgttctcccctgtggat
gacgactgtctagcaactgcttctgctgatcgaactgcaaagctgtggaaaactgatgga
acactagtacaaacttttgaaggtcatttggatcgtcttgcacgcgttgccttccaccca
tcagggagatacctaggaacaaccagctttgacaaaacatggagattgtgggatataaac
acaggtgcagagctgctcttgcaagaaggtcacagtcacggtgtctgtggaattgcattt
caacaagatggagcattagcagcttcttgtgggcttgattcactcgcacgggtttgggat
ctccgcactggtaggagtattcttgtcttccaaggaaaaaccaaacctctactctcagtg
tacttctctcctaatggttatcacttggcatctggtggtgaggataatcaatgccgtata
tgggatttaaggatgagagagtcattgtacactatagcagctcattctaaccttgtgtct
caagtgaagtatgaaccacaagcaggtcacttcctggccactgcctcctacgacatgaat
gtcaacatatggtcgggaagagatttctcgctcgttaaaagcttagcagggcatgagtca
aaagtcgcctctctcgatatcactccagatagctcgtgtattgctactgtatcacatgac
cgcaccatcaagatttggacgagcagtggaaatggcgaagatgaatcataa
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