Camelina sativa (false flax): 104784164
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Entry
104784164 CDS
T05044
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104784164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104784164
Enzymes [BR:
csat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104784164
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104784164
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104784164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
Motif
Other DBs
NCBI-GeneID:
104784164
NCBI-ProteinID:
XP_019100413
UniProt:
A0ABM1RN25
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All DBs
Position
4:complement(22097180..22107479)
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AA seq
596 aa
AA seq
DB search
MLSVIRVHLPSEIPIVGCELTPYVLLRRPDKTPTTDDVPESAPLEGHFLKYRWYRVQSDK
KVAICSVHPSEPATLQCLGCLKSKVPVSKSFHCSTKCFSDAWQHHRVLHERAASAAAAAE
GNDEEELLRLNSSGSGSGILSTSGSLTNVYPAAITQKTGAGGETLVEVGRSKTYTPMADD
IGHVLKFECVVVNAETKQNVGLSCTILTSRVIPAPSPSPRRLIPVNGADVIGQLDSNGRP
FSMGSFTVLSYNILADTYASSDIYSYCPAWALAWTYRRQNLLREIVKYRADIVCLQEVQN
DHFDEFFAPELDKHGYQALFKRKTNEVYVGNTNTIDGCATFFRRDRFSHVKKYEVEFNKA
AQSLTEALIPVTQKKTALNRLVKDNVALIVVLEAKFGNQAADNPGKRQLLCVANTHVNVS
HELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNTVPASAPHSLLAMGKVDPLHPDLM
VDPLGILRPHTKLTHQLPLVSAYSSFARMGGSLIAEQQRRRMDPASNEPLFTNCTRDFIG
TLDYIFYTADTLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCMPRARR
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgcttagcgttatacgagtacatctaccgtcggagatacctattgttggatgtgaactt
actccttacgtgcttctccgccggcctgataagactcccaccaccgatgatgtacctgaa
tcagctccgcttgaaggtcacttcttaaagtacagatggtatcgggttcagagtgataaa
aaagttgctatttgtagtgtgcatccatctgagccggccacattgcagtgtttgggatgt
ttaaagtctaaggttcctgtttccaaaagtttccactgttctaccaagtgcttttcagat
gcgtggcagcatcaccgtgtgttgcacgagcgtgctgccagtgctgctgctgctgcagaa
ggaaatgatgaagaagagttgctccgtttgaatagttcagggtctggatctggcattctc
agcaccagtggtagtttaactaatgtttatcccgcagccataactcaaaagacaggtgct
ggtggagaaacacttgttgaggttggacgctctaagacatacacaccaatggctgatgat
attggccatgttttgaagtttgagtgtgtagtggtcaatgccgagacaaaacagaatgtg
ggcctttcttgtaccatattgacctcccgtgttattccagctccatcaccttctccgcga
aggctgattcctgttaatggagctgatgttatcggacagctggattctaatggaagacct
ttttctatgggatcattcactgtgctctcctacaatatattggctgatacatacgctagc
agcgacatatacagttactgtcccgcgtgggctctcgcttggacataccgtagacagaat
ttactacgggaaattgtcaagtatcgcgcagatatagtttgtctgcaagaggtacagaat
gatcattttgatgagtttttcgctcctgagctggataagcatggataccaagctcttttc
aagaggaagacaaatgaggtttacgttggtaatacaaacacaattgatggatgtgctact
tttttcagaagagacaggttttctcatgttaaaaaatacgaggttgagttcaataaggct
gcccagtctttgaccgaggctcttattcctgttacccagaagaaaactgctttgaatcgt
ttggttaaggacaatgttgctttaatagttgtactggaagcaaaatttggcaaccaggct
gctgacaatcctgggaagcgccagctactttgtgtggctaacacgcatgtaaacgtttct
catgaactgaaggatgtcaagctctggcaggttcacacattattgaagggactggagaaa
atagctgctagtgcagatattccgatgcttgtgtgtggagatttcaacacagtaccagcg
agtgcccctcattcacttcttgctatggggaaggtcgatccattgcacccagatttgatg
gtcgatcctcttggaattttgcgtcctcacaccaagctaactcatcagctgccactggtt
agtgcttactcatcatttgcaagaatgggaggcagccttattgctgagcagcaaaggaga
agaatggatcctgcatcaaatgaaccattgtttaccaactgtaccagggactttataggc
acacttgattacatattttacacagctgatacgttaacagtggaatcattattggaactg
ttggatgaagagagcttgaggaaggacactgctcttccatctccagaatggtcttctgat
cacattgcacttttagctgaattccgctgcatgcccagggccagacgctga
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