| Entry |
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| Name |
(RefSeq) DEAD-box ATP-dependent RNA helicase 6
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| KO |
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| Organism |
csat Camelina sativa (false flax)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:csat00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104784736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:csat03019]
104784736
03036 Chromosome and associated proteins [BR:csat03036]
104784736
Enzymes [BR:csat01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104784736
Messenger RNA biogenesis [BR:csat03019]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
104784736
mRNA degradation factors
5'-3' decay
Decapping complex
104784736
Chromosome and associated proteins [BR:csat03036]
Eukaryotic type
Gene silencing
piRNA pathway
104784736
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
5:complement(1113119..1116346)
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| AA seq |
520 aa
MNNNISRGRFPPGIGAAGPNFQSRTPNPNPTQQPHPQEYLQSRSPFPQQPQTQPPQYLQS
QPDAHQFVQRAYPQTNPHQIQQQQQQQWSGGRAQLPSDPSYVDEVEKTVQSEANNDSNTQ
DWKATVKLPPRDDRYQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIA
LTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKY
LKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLSKKGVCVLKDCTMLVMDEADKL
LSVEFQPSIEELIQFLPENRQILMFSATFPVTVKSFKDRYLRKPYIINLMDQLTLVGVTQ
YYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQD
HRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRYGHL
GLAVNLVTYEDRFKMYQTEQELGTEIKPIPSLIDKAIYCQ |
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| NT seq |
1563 nt +upstreamnt +downstreamnt
atgaataataatattagtagaggaaggtttcctccggggattggagcggcgggtcctaat
tttcagtcacggactccgaacccgaacccgactcagcaacctcaccctcaagagtacctt
cagtcacggtctccgtttcctcagcaacctcaaactcaacctccacagtatctccagtct
caacctgatgctcaccagttcgttcaacgagcttacccacagaccaatcctcaccagatt
caacaacaacaacaacaacaatggtctggaggacgcgctcagcttcctagtgatccgagt
tacgtagatgaagtcgagaagacggttcagtctgaagctaacaacgattctaatactcaa
gactggaaggcaaccgtaaagctgcctccacgagatgatcgttaccagacagaggatgtg
actgccactaaaggaaatgaatttgaagattactttttgaagagagatctgcttagagga
atttacgaaaaaggttttgaaaagccttcacctattcaggaagaaagcatccctattgct
ttgactggtagtgatattcttgctagagccaaaaatgggacaggcaagactggtgccttc
tgcattccgacccttgagaaaattgatccagagaacaatgtcattcaagctgtgattctc
gttccaacccgagagcttgcccttcaaacatcacaggtttgtaaggagctttccaaatat
cttaaaattgaggttatggtcaccactggcggtaccagtctgagagatgatatcatgcga
ttatatcaacctgtacacttgcttgttggaactcctggacgaatattagatctttccaaa
aagggtgtgtgtgttttgaaagattgtaccatgcttgtaatggacgaggccgacaagctt
ttgtctgtagaatttcaaccttccatagaggagttgatacagttcttgccagaaaaccgt
cagattctgatgttttcggctacatttcctgtcactgtgaagtccttcaaggatcgatat
ctcaggaagccttacattatcaatctcatggatcagctcacacttgtgggtgttacccaa
tattatgcttttgttgaagagagacagaaggtgcactgtctgaatacactattctctaag
ctccaaataaaccaatccattatcttttgtaactctgttaatcgtgtggagctgttggcc
aagaaaatcacagaactcggttactcatgcttctatatccatgctaaaatggttcaagat
catcggaacagggttttccatgattttcgcaatggtgcttgcagaaaccttgtttgcact
gatttgtttacacgtgggattgacattcaagctgtgaatgttgtcataaattttgatttt
cctaggacttctgagtcctatctacacagggtaggcagatcgggaagatatggacacctt
gggttggctgtgaatttggtaacttatgaggaccgcttcaaaatgtatcaaactgagcaa
gaacttggaactgaaatcaagccaataccttcacttatcgacaaggcaatctactgtcag
taa |
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