Camelina sativa (false flax): 104785115
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Entry
104785115 CDS
T05044
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
csat
Camelina sativa (false flax)
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104785115
03041 Spliceosome [BR:
csat03041
]
104785115
03036 Chromosome and associated proteins [BR:
csat03036
]
104785115
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104785115
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104785115
mRNA cycle factors
Common to processing body (P body) and stress granule
104785115
Spliceosome [BR:
csat03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
104785115
Chromosome and associated proteins [BR:
csat03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
104785115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
NPF
Motif
Other DBs
NCBI-GeneID:
104785115
NCBI-ProteinID:
XP_010508560
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All DBs
Position
5:complement(2792762..2796658)
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AA seq
623 aa
AA seq
DB search
MSASWADVADSENANSGSSNQNSHPSRPAYVPPHLRNRQPTSDPVAAPLPANDRVGFGGP
PSGSRWAPPSASAGSGGVGGGYRADAGRSGYGYGGRGGGGWNNRSGGWDRREREVNPFEN
DDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYV
KPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLA
VILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLND
LLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGIRQTLLFSATFPREI
QRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQAL
TLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAAR
GLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLSELMQEA
NQEVPAWLTRYASRSSFGGGKNRRSGGRFGGRDFRREGSYSRGGGGNDYYGGGGGYGGGG
GYGGGYGGAPSGGYGGETPSAWD
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcatcatgggctgatgtggctgactcagagaatgctaattctgggtcatctaat
cagaattctcatccttctcgacctgcttatgttcctccacatctaaggaacaggcaacct
acttctgaccctgttgctgctccattgccggctaatgatcgtgtaggttttggtggtcca
ccttctgggtctcgatgggctcctcctagtgctagtgctggttctggtggtgttggtggt
ggttatagggctgatgctggtcgttctggctatggctatggtggaagaggaggtggtggt
tggaacaacagaagcggaggctgggatcgtagggaacgtgaagtcaacccttttgagaat
gatgattccgaaccagaaccagcttttactgagcaggataataccgttattaattttgat
gcctatgaagatattccgattgagactagtggggataatgtgcctcctcctgttaacaca
ttcgctgagattgatcttggggaggccttgaatcttaacatccgtagatgcaaatatgtt
aagccaacacctgtacagcgtcatgctatccctatattgcttgaagggagagatttgatg
gcttgtgctcagactggctctgggaagactgctgctttttgctttccaattattagtgga
attatgaaggatcagcatgtacagagaccccgtggttcacgcacagtttaccctcttgca
gtcattctctcaccaaccagggagttggctagtcagatacatgatgaggctaaaaagttc
tcctaccaaactggtgtgaaggttgttgttgcatatggaggaacacctattaaccagcag
ctcagggaacttgagaggggagttgatattcttgtggcaactcctggtcgactaaatgat
ttactcgagagagctagagtctctatgcagatgattagatttttagctctggatgaggcc
gataggatgctggacatgggttttgaaccgcaaattagaaagattgttgaacaaatggat
atgcctccccgtggaattagacagacattgttgtttagtgctacttttccaagagaaatt
cagagacttgcagctgatttcttagcaaattatatttttttggctgtgggtagagtgggt
tcaagtactgatttaattgtccaaagggttgagtttgtccttgactctgacaagagaagt
catctcatggacctgcttcatgctcagagagagaatggcatccaaggcaagcaagctctg
accttagtttttgtggagacgaagaggggagctgactctttggaaaattggctttgcatc
aacgggtttccagcaacctccattcacggggaccgaacacagcaggaaagagaagtggca
ctgaaggccttcaagagtgggagaacaccaattttggttgcaacagatgtagcagcacgt
gggcttgacattcctcacgtggctcatgtggtcaactttgatctaccaaatgacattgat
gactatgtccaccgcattggacgaacaggacgtgctggcaaatcaggattggcaactgcc
ttcttcaacgatggcaacacctcactggccagaccgctttctgagctgatgcaagaagct
aaccaggaagtccctgcgtggctcactcggtatgcatcacgctcctcttttggtggtggc
aagaatcggcggtctggtggtcggtttggtggtcgtgactttagaagggaagggtcttac
agtagaggaggcggtggtaatgattactatggtggtggaggaggctacggcggaggagga
ggctacggtgggggatatggcggtgctccaagtggtggatatggcggagaaactccaagt
gcttgggactaa
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