Entry |
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Name |
(RefSeq) endoribonuclease Dicer homolog 2 isoform X1
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KO |
K11592 | endoribonuclease Dicer [EC:3.1.26.-] |
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Organism |
csat Camelina sativa (false flax)
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Brite |
KEGG Orthology (KO) [BR:csat00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:csat03036]
104785142
Chromosome and associated proteins [BR:csat03036]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
104785142
microRNA pathway
RISC loading complex
104785142
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
1:complement(815114..824653)
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AA seq |
1397 aa
MLQMTMDADVMETETVDQAVSASPLQFARSYQVEALDKAINQNTIVFLETGSGKTLIAIM
LLRNYAYLFRKPSPSFSVFLVPQVVLVTQQAEALKMHTDLQVGMYWGDMGVDFWDSSTWK
QQVDKYEVLVMTPAILLDALRHSFLNFSMIKVLIVDECHHAGGKHPYACIMREFYHKLLN
SGTSDLPRIFGMTASLVKTKGENLDSYWKKIHELETLMNSKVYTCENESVLAGFVPFSTP
RFKYYQNMELPNLKRASWVEKLEKLTMKHRLSLATLDLKSSTVDSIEKRLSRIVSTLTYC
LNDLGILLAQKAAQSLSASQNDFFLWGELNMFSLTLVKKFCSDASQAFLADIPHGRDWTV
SNIKGNVEEGLLTSKTVCLVETLLGYSSLENIRCIIFVDRVITAIVLESLLAEILPNCNN
WKTKYVAGNNSGLQNQTRKKQNEIVEDFRKGLVNIIVATSILEEGLDVQSCNLVIRFDPA
SNICSFIQSRGRARMQNSDYLMMVESGDLLTQSRLKKYLSGGKRMREESLHHSLVPCPPL
PDDSDELSFRVESTGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDINKDLGICTLYLP
KSCPVKEVKAQANGKVLKQIVCVEACIQLHEVGALSDHFVPDMVVAETVAQKLEKIHYNT
EQPCYFPPELVSQFSAQPQTTYHFYLIRMEPNSPRKFHLNDVLLGTRVELEDDIGNTGFR
LEDHKGTIAVTLSYVGAFHLTQEEVLMCRRFQITLFRVLLDHSVENLMKALDGLHLSDGV
AVDYLLVPSTYSHETSLIDWEVIRSVNLTCHKALEKHLKCSTNGASRVLHTKDGLFCTCV
VQNALVYTPHNGYVYCTNGILNNLNANSLLTKRETGDKTYIEYYEKRHGIQLKFLDEPLL
NGRHIFTLHNYLHMTKKKKEKEHDREFVELPPELCHIILSPISVDMIYSYTFIPSVMQRI
ESLLIAYNLKKSIPKVNIPTIKVLEAITTKKCQDQFHLESLETLGDSFLKYAVCQQLFQH
CRTHHEGLLSTKKDGMISNVMLCKLGCEQKLQGFIRNECFEPKGWMVPGQSSAAYTLVND
TLPEFRNIYVTSRRNLKRKSVADVVESLIGAYLSEGGELAALLFMNWVGITIDFTTTKME
RESPIQAEKLVNVGYMESLLKYKFEDKSLLVEALTHGSYMIPEIPRCYQRLEFLGDSVLD
YLITKHLYDKYPCMTPGLLTDMRSASVNNECYAQVAVKANLHKHILHASHDLHKHISRTV
SEFERSSLQSTFGWESDVSFPKVLGDVIESLAGAIFVDSGYNKSVVFASIKPLLGCMITP
ETVKLHPVRELTELCQKAQFELSTAKGFKNGEAYFTVEVKAKEMSFAHTSKASDKKLAKK
MAYKQVLNSLTESLLAS |
NT seq |
4194 nt +upstreamnt +downstreamnt
atgttacagatgacaatggatgctgatgtgatggaaactgagaccgttgatcaagccgtc
tctgcctctcctctccaatttgcaagaagttatcaggttgaggctcttgataaagctatc
aatcagaacactattgtcttcttggagactggttctggcaagacccttattgccattatg
cttcttcgtaactatgcctacctttttcgcaagccttcaccctctttctctgtcttcttg
gttcctcaagttgttcttgtcactcagcaagcagaagcactgaagatgcatactgatcta
caagttggtatgtattggggagacatgggggttgacttttgggattcttcaacttggaaa
caacaagtcgacaaatatgaggttctggtgatgacccctgccattttgctcgacgctttg
aggcatagttttctgaacttcagcatgatcaaggttctaatagttgatgaatgtcatcat
gctgggggaaagcacccctatgcttgtatcatgagggagttttatcacaaactgttaaat
tctggaacttctgatcttccgcggatatttgggatgactgcatcccttgtgaaaacaaag
ggtgaaaatctggatagctactggaagaagattcatgaactcgaaaccctaatgaattca
aaggtctatacctgtgagaatgagtctgtgctggctgggtttgtccccttctctacacca
aggttcaagtattaccagaacatggaattaccaaatctcaaacgagcaagctgggtagag
aagttagaaaaactaacaatgaagcatcgcttatcccttgcaaccttggatctcaaatcc
tctactgttgattctatagagaagagactgtcgaggatagtttcaactctaacatattgt
ttgaatgatctcggaattttgctggcgcagaaggctgctcagtcattgtcagccagtcag
aatgactttttcttgtggggcgaactaaacatgtttagcctgaccttggttaaaaaattc
tgttctgatgcttcacaggcgtttttggctgacatacctcatggtcgtgattggactgtt
tctaacattaaaggaaatgtggaggaaggtctcctaacatcaaaaacagtctgcctcgtt
gagactcttcttggttacagctccttggagaacatacggtgcatcatatttgtggatagg
gtgataacagccattgtactggaatcccttttggctgagattcttccaaattgtaataac
tggaaaaccaagtacgttgcaggaaataactctggtctgcaaaatcaaactcggaagaag
caaaatgaaattgtggaagatttccggaaaggcttggtaaacatcattgtagcaacatct
attctagaggagggtctagatgttcaaagttgcaacctggttatcagatttgaccctgca
tccaacatttgcagtttcatacagtcccgtgggcgtgcgaggatgcaaaattcagattat
ttgatgatggtggaaagcggagatctgttaacacaatctcggttgaagaaatatctttct
ggtgggaaaagaatgcgtgaggagtctttgcatcattctcttgttccctgtccacctctt
ccagatgattcagatgaactatccttccgcgtcgaaagtactggcgcaacagtaactctt
agctcaagcgtcagcctaatatatcattactgctcaaggctcccatcagatgagtacttc
aaaccagctcctagattcgatataaacaaggatctggggatttgcaccctctaccttcct
aagagctgcccagtaaaagaagttaaagctcaagcgaatggtaaagtgttaaaacaaatt
gtctgtgtagaagcttgcattcaactgcacgaagtcggagctctaagtgatcattttgtg
ccggacatggttgtggcggaaactgtcgcacaaaaactcgagaaaatccactataacaca
gaacagccatgttacttccccccagagctagtctcccagttttcagcacagccgcagaca
acataccacttctacttaataagaatggagccaaactctccaagaaaatttcatctaaac
gatgttttgctgggcactagagttgagcttgaagatgacattgggaacacaggcttcagg
ttggaagatcataagggtacaatagccgtgacattgagttatgtgggagcgtttcaccta
acacaagaggaggtccttatgtgtagaagatttcagataactcttttccgagttctttta
gatcacagtgtggaaaatttgatgaaggctttggatggattgcatcttagtgatggggta
gcagttgattatctactagttccatccacttattctcatgaaacatctcttattgattgg
gaggtgatcagatccgtgaatctaacttgtcataaagctttggaaaaacatttaaaatgt
tctaccaatggtgcttctcgcgtgctacatacaaaagacggcttgttttgtacttgtgtc
gtacaaaatgcattggtttacacaccacataacggatatgtctactgcacgaatggcatt
cttaacaatctaaacgcgaattcgttattgacgaagagagagactggcgataagacttat
attgagtactatgagaaacggcatgggattcagttaaaatttttggatgaaccgcttcta
aatggaagacacattttcacgctgcataattatctccacatgaccaagaagaaaaaggag
aaagagcatgacagagagtttgtcgaactacctcctgaactgtgtcatatcattttgtcc
ccaatatcagttgatatgatctattcatatactttcatcccatctgttatgcaacgcatt
gaatctttgcttatagcatacaacctaaagaagagcatcccaaaagtcaatattccaaca
atcaaggttctggaagctataacgacaaaaaagtgccaagatcagtttcacctggaatca
ctagaaactcttggtgactcatttctgaaatatgctgtttgtcagcaactattccaacac
tgtcgtactcaccatgagggtcttcttagcacgaagaaagatggaatgatttcaaatgtt
atgctctgcaaacttggttgtgagcagaaacttcagggatttatccgcaatgagtgtttt
gaacctaaaggttggatggttcctggtcaatcatctgcagcttatactcttgttaatgat
accctacctgagtttagaaacatatacgttactagtaggaggaatttgaaacgcaagagt
gtggctgatgttgtagaatcactaattggggcatatctcagcgagggaggtgaacttgca
gctttgttgttcatgaattgggtgggtataacgatcgatttcacaactacgaagatggaa
cgagagtccccaatacaagcagagaagcttgtgaatgttggttatatggagtcgttgttg
aaatacaaatttgaggacaagtctcttctagttgaagcattgactcatggttcatacatg
attcctgaaattccacgatgctatcagcggttggagtttctcggtgactcggtgttggat
tatctcataaccaaacatctttacgacaaatatccttgtatgactcctggactgctaacc
gacatgcgatcagcttctgttaacaatgaatgttatgctcaagtggcggtgaaagcaaac
ctgcacaaacacatcctgcatgcatctcatgatctccacaagcacatctctagaacagtc
agtgagtttgaacggtcgtctttgcaatccactttcggatgggaatccgatgtatctttt
cctaaggtccttggagatgtgatagaatctttagcaggcgccatatttgtagactcaggt
tacaacaagagtgtagtgtttgcgagcattaaaccactattaggttgtatgataactcca
gagaccgtcaagttgcatcctgtgagagagttgacagaattatgccagaaagcgcagttt
gagttgagcacagcgaaaggtttcaaaaatggtgaagcttatttcacggttgaagtgaaa
gctaaggaaatgagttttgctcacacatcaaaggcctctgataagaaattggccaagaaa
atggcttacaaacaagtcttgaattcacttacagagtctcttcttgcctcctag |