Camelina sativa (false flax): 104785231
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Entry
104785231 CDS
T05044
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104785231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104785231
Spliceosome [BR:
csat03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
104785231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
PRP4
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_DCAF4
WD_LRWD1
eIF2A
Beta-prop_SPT8
WD40_like
STELLO
Nbas_N
Motif
Other DBs
NCBI-GeneID:
104785231
NCBI-ProteinID:
XP_010508711
LinkDB
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Position
5:3340046..3343160
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AA seq
548 aa
AA seq
DB search
MEPNKEDNVSLTPTAQITAPPVPGFSALPPVVPPSFPPPMAPIPMMPHPPVSRPPTFRPP
LSQNGETKTSDSDSDSDDEHFEISEGSRQVRERQEKAMQDLMVKRRTAAVAVPTNDKSVR
DRLRRLGEPITLFGEQEMERRARLAQLMGRLDMNGQLDKLLEAHDEDAAPKEEVDDDVPE
YPFFTEGPKELREARIEIAKFSIKRAAVRIQRAKRRRDDPDEDMDAETKWALKQARNMVL
DCSNFGDDRPLTGCSFSRDGKILATCSLSGVTKLWEMPQVTKKIAILKDHKERATDVVFS
PVDDCLATASADRTAKLWKTDGTLLQTFEGHLDRLARVAFHPSGRYLGTTSFDKTWRLWD
INTGAELLLQEGHSRSVYGIAFQQDGALAASSGLDSLARVWDLRTGRSILVFQGHIKPVL
SVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGYFLATASYD
TRVNIWSGRDFSLVKSLAGHESKVSSLDITADSSCIATVSHDRTIKLWTSSGNGDDEDEG
KDTMDIDL
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggaacccaacaaggaagataatgtgtcattgacacctactgctcaaatcacagcacct
ccagttccaggtttctctgctttaccacctgtggttcctccttctttccctccaccaatg
gccccaataccaatgatgccacatcctccagtttcccgcccacctacttttaggccacct
ctttcacaaaatggtgaaacgaaaaccagtgactcggattctgattcagacgatgaacat
tttgagatatctgaagggagtaggcaggtcagagaaagacaggaaaaggcgatgcaagat
ttgatggtaaagcgtcgtactgctgctgtcgcagttccaacaaatgacaaatcagttagg
gatcgccttagacgacttggggagcccattactctatttggagaacaggaaatggagaga
agagctaggttggctcagcttatgggtaggcttgatatgaatgggcagttggataaacta
cttgaagctcacgacgaagatgcggctccaaaagaggaagtggatgatgatgtacctgaa
taccctttctttaccgagggtccaaaggaacttagagaggctagaatagaaattgccaag
ttttctatcaagagagctgctgtcaggattcagcgtgcaaagcggcggagggatgatcca
gatgaagatatggatgcagagactaagtgggctttaaagcaggctagaaacatggtcctt
gattgcagtaattttggagacgatcgtcctcttactggctgctccttctctcgcgatgga
aaaatacttgccacatgttctctaagtggagttacgaaattgtgggagatgcctcaagtt
acaaaaaagattgctatcttgaaggaccacaaagaacgtgcaactgatgtagtgttctcc
cctgtggatgattgtctagcaactgcttctgctgatcgaactgcaaagctgtggaaaact
gatggaacgctcctacaaacttttgaaggtcatttggatcgtcttgcacgggttgccttc
cacccatcaggaagatacctgggaacaaccagctttgacaaaacatggagattgtgggat
ataaacacaggtgcagagctgcttttgcaagaaggtcacagtcgcagtgtctatggaatt
gcatttcaacaagatggagcattagcagcttcttctgggcttgattcactcgcacgggtt
tgggatctccgcactggtaggagtattcttgtcttccaaggacacatcaagcctgtactc
tcagtgaatttctctcctaatggttatcacttggcatctggtggtgaggataatcaatgc
cgtatttgggatctaagaatgagaaagtcactgtacattatcccagctcatgctaacctt
gtgtctcaagtgaagtatgaaccacaagaaggctacttcctggccactgcctcatacgac
acgagagtcaatatatggtcgggaagagatttctcgctcgtcaaaagcttagcaggacat
gagtcaaaagtctcctcgctagatatcactgcagatagctcgtgtatcgcaactgtatcg
catgaccgcaccatcaagctttggacgagcagtggaaatggtgatgatgaagatgaaggg
aaagatacaatggacatagatctttag
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