KEGG   Camelina sativa (false flax): 104785486
Entry
104785486         CDS       T05044                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase V subunit 1-like
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
csat  Camelina sativa (false flax)
Pathway
csat03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    104785486
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:csat03021]
    104785486
Enzymes [BR:csat01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     104785486
Transcription machinery [BR:csat03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     104785486
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 DUF1564
Other DBs
NCBI-GeneID: 104785486
NCBI-ProteinID: XP_010509007
LinkDB
Position
5:complement(4558938..4567973)
AA seq 1834 aa
MEEESSSSEILEGEIVGITFALASNHEICVASISESSINHASQLSNPFLGLPLEFGRCES
CGATEPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKIKKAKSTSGGLAERLL
GVCCEEAANISIRDRSSDGASYLELKLPSRSRLQAGCWNFLERYGYRYGSNYTRPLLARE
VKEILRRIPEETKKKLTAKGHIPQEGYILEYLPLPPNCLSVPDVSDGFSSMSVDPSRIEL
KDVLKKVIAITSSRSGETNFESHQAEANGMFRVVDTYLQVRGTAKATRNIDMRYGVSKIS
DSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRDVNEVGIPIEIAQRITFEERVSVHN
ISYLQELVDNKLCLSYTQGSTTYSLRDGAKEHTVLKPGQVVHRRVMDGDVVFINRPPTTH
KHSLQALRVYVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQL
LSSHTGQLILQMGCDSLLSLRVMLERVFLDKATAQQLAMYGSLSLPPPALRKSSKSGPAW
TVFQILQLAFPERLTCKGDRFMVDGSDLLRFDFGVDAMASXINGIVTSIFLEKGPKEALG
FFDSLQPLLMESLFAEGFSVSLEDLSMSRADMVSRLRLSYEDELQLENSIHKVKEVAANF
MLKSYSMRNLIDIKSNSAINKLVQQTGFLGLQLSDKKKFYTKTLVEDMALFCKRKYGRIS
SSGDFGIVKGCFFHGLDPYEEIXHSIAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVITN
DGTVRNTCSNSVVQFKYGVDSEHGHQGLFEAGEPVGVLAATAMSNPAYKAVLDSTPNSNS
SWELMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQENAAYTVRNKLKKVSLKDTAV
EFLVEYRKQQTISEIFGIDSCLHGHIHLNKTLLQDWNISMQDILQKCEDIINSRGQKKKK
KATDDFKRTSLSASECCSFRDPCGSKDSDMPCLMFSYNATDPDLEIILDVLCNTIYPVLL
DTVIKGDPRICSANIIWHSSDMTTWIRNRHASRRGEWVLDVTVEKSAVKQSGDAWRVVID
SCLSVLHLIDTKRSIPYSIKQVQELLGLSCAFEQAVQRLXASVRMVSRGVLKEHIILLAN
NMTCSGNMLGFNSGGYKALTRSLNIKAPFAEATLITPRRCFEKAAEKCHKDSLSTVVGSC
SWGKRVDVGTGSQFELLWNQKETGLDNQEETDVYGFLQMVKSTTNADAYVSSPGFDVTEE
EMAEWAESPERDSALGEPKFEDSAEFQTIYEEGQPSGSNWEKSSSSSWDNGCSGGPEWGV
SKNTGGEADPESNWEKTTHVEKEDAWSGWNTKKDAQESSKSDSGGAWGLKTKDDDANTTP
NWETRPAHTDSIVPENSEPSSDVWGLKSVSDKSWEKKNWGTESAPAAWGSTDAAVWGSSS
KMNSETESDAAAWGSKDKKNSYIGSGAGVLGPWNKKSLETESDSATWGSSDKTKSGAAAW
SSWDRKNMETDAWGSQVKKKSDTESGPAAWGAWDTKKSETESGLAGWGTADKKNSETESG
PAAWGSWGQPSPTAADNDTNEDDGNPWVSLKETKSRENDDKERIQWGNPAKKFPSNGSHG
GWSNGGGADWKGKRNHTPRPPRSEDNLAPMFTATRQRLDSFTSEEQELLSDVEPVMRTLR
KIMHLSGYPDGDPISDDDKTFVLEKILNFHPEKEKKLGSGVDFITVDKHTTFSDSRCFFV
VSTDGTKQDFSYRKSLNNYLMTTYPDRAEEFIDKYFPKPRQTQAQSPSQAQAHSPSQTQA
QSQSSSQNQTQTPSPSQTQAQSPSQTQSPSQTQT
NT seq 5505 nt   +upstreamnt  +downstreamnt
atggaggaagaatcttcttcatcagaaattctagaaggagagattgttggaatcacattt
gcccttgcaagtaaccatgaaatctgtgtagcatcgattagtgaatcctcaatcaatcat
gccagtcaactctctaaccccttcttggggttgcctctggagtttggcaggtgtgaatcg
tgcggtgcgacagagccagataaatgtgaaggtcatttcggttatattcagcttccagtg
ccaatataccatcctgctcatgttaatgaactgaaacaaatgctgagccttctgtgcttg
aaatgtctgaagataaagaaggcaaagagcacaagtggtggtctggcggagcgcttatta
ggtgtctgttgtgaggaagctgcaaacatctcaatcagagatagatcatcggatggggcc
tcatatctagaactgaagctcccatctaggtcaagactgcaggcgggttgctggaatttc
ctggaaagatatggttaccgctatggaagcaactacacgcggcccctgttggcaagagag
gtaaaggaaattctaagacggatccctgaagaaacaaaaaagaaactcacagcaaaggga
catattcctcaagaaggatacatattggaatatcttccactcccgcctaactgtttgtca
gtgccagatgtttctgatggtttcagctccatgtcagtggatccttccagaattgagcta
aaagacgttcttaagaaagtgatagccataacaagctctaggtctggcgagacaaacttt
gagtcgcatcaagctgaagccaatggaatgtttagagtggtggatacctatctgcaggtt
aggggtactgccaaagcaacaagaaacattgacatgagatacggggtgtctaagatctcg
gatagttcatcttcaaaagcttggacagaaaaaatgagaacacttttcatccgaaagggt
tcaggtttctcttcccgtagcgtcatcactggagatgcgtacagagatgtgaatgaggta
ggcatcccaattgaaattgcgcagagaatcacttttgaggaaagggttagtgtccacaac
ataagttatctacaagagttagtagacaacaagttgtgtttgagttatactcaaggttcg
acgacctattctttaagggatggagccaaggagcacactgtgcttaaacctgggcaggtt
gttcatcgcagggtcatggatggggatgttgtgtttatcaaccgacccccgacgacacat
aagcattctcttcaagcgcttcgggtgtatgttcatgaagataacaccgtgaagattaac
cctctgatgtgtagtcccctcagtgctgattttgatggtgattgtgtccatctgttctac
ccacagtcacttagtgctaaggcagaggttatggagctcttctctgtggagaagcaactg
cttagctcccatactggacagctgattttgcagatgggttgtgattctttactgtctttg
agggttatgctggagcgggtgtttctggacaaggcaactgctcaacagttagctatgtat
ggctctctgtctctgccaccaccagcactaaggaagtccagtaaatctggcccagcttgg
acagtttttcagattctacagcttgcctttccagagcgtctgacctgcaaaggtgacaga
ttcatggttgatggaagtgatttgctgaggtttgatttcggggttgatgcgatggcatcc
ntcatcaatggcattgtaacttcaatctttctggagaagggtccaaaggaggcacttgga
ttcttcgactcgctacaacctcttttgatggaaagtctttttgctgagggatttagtgta
agtttggaagacttatccatgtctagggcagacatggtgtctcgcttgagattatcatat
gaagatgaattgcaactagagaacagcatccacaaagtgaaggaagtggctgctaacttt
atgcttaagtcatattccatgcggaacttgatcgacatcaagagtaactcagcaatcaac
aagctggtgcagcagacaggcttcttgggtcttcagctttctgacaagaagaaattctac
acgaagactctggtagaggacatggctctcttttgtaagagaaagtacggcaggatttct
tcatctggcgattttggaatagtgaagggctgcttctttcatgggctggatccgtatgaa
gagattnttcattcaattgcagcaagggaggttattgttcgctcttcaagggggttagct
gagcctggaactctctttaagaatctgatggctgttcttcgggatatcgtgattacaaac
gatggaactgtaagaaacacctgtagtaactcagtcgttcagttcaaatatggagttgat
tctgaacatggacatcaaggtctttttgaggcgggagaacctgttggagtattggcagct
actgccatgtcaaatcctgcgtataaggcagtgcttgattccactccaaatagtaattca
tcatgggagctaatgaaggaagttctgctctgcaaagtcaatttccaaaacactactaat
gatcggcgcgtaattctatatttgaatgaatgccattgtggaaaaaggttttgccaggaa
aatgctgcttacacagtcaggaacaagctgaagaaagttagtcttaaagatactgccgtg
gaattcctcgtcgaatacagaaagcaacaaactatatcagaaatttttggaattgattca
tgcctacatggccatattcatcttaataagacattgttgcaagattggaacatcagtatg
caggatatccttcaaaagtgtgaggatataattaattcacgaggacaaaagaaaaagaag
aaagctactgacgacttcaagagaacaagtttgtctgccagtgagtgctgctctttccga
gatccttgtgggagcaaagattcagatatgccttgtttgatgttctcctacaatgccacc
gatcctgatctagaaataattcttgatgttctttgcaatacaatttacccggttctgctg
gatacagtgatcaaaggtgatccacggatttgctcagcaaatataatctggcatagttca
gacatgacaacgtggatccggaatcgtcatgcatcccgccggggggaatgggttttggat
gtcactgttgaaaaatctgctgtcaagcaaagtggtgatgcatggagggttgtgatagac
tcatgtctttcagtgcttcatctgatagacacaaaacggtcaatcccttattctataaag
caagtgcaagaattgcttgggttatcctgtgcttttgaacaagcagtacagcgtctataa
gcttcagtgagaatggtctccagaggagtcttgaaagaacacatcattctcctagcaaac
aacatgacttgttcagggaatatgttgggtttcaattctggaggttacaaagctttgacc
cgatccttaaacattaaggctccattcgcagaagcaactctgattacaccaagaagatgt
tttgagaaagcggctgagaaatgtcataaagattctctatcaacagtcgttgggtcttgt
tcttggggaaaacgcgtggatgttggtacaggttcacagtttgagcttctatggaaccaa
aaagagactggtctagataatcaagaagaaacagatgtgtacggcttcctccaaatggtc
aaatccacgacaaatgcagatgcatatgtgtcttcccctggttttgatgttacagaggaa
gaaatggctgaatgggctgaatcgcctgagcgagactctgcccttggagagcctaaattt
gaggacagtgccgagttccaaactatatatgaagaaggccagccatcaggatccaactgg
gagaaaagctcttcttcttcgtgggataatggttgcagtggtggcccagaatggggagtc
tcaaaaaacacagggggtgaggcagacccggagtctaattgggaaaagactacacatgtt
gagaaggaagatgcttggtctggttggaacactaaaaaagatgctcaagaatcttccaag
tcagattcagggggtgcttggggcttaaagacaaaggatgatgatgcaaatacaacacca
aactgggaaacaagaccagctcatacagattctattgtcccagaaaatagtgagccgtct
tctgacgtttggggactcaaatctgtttcagacaaatcatgggagaaaaagaactgggga
actgaatcagctcctgctgcatggggttcaacagatgctgctgtttggggttctagtagc
aaaatgaactcggaaactgaatcagatgctgctgcttggggttctaaggacaaaaagaat
tcttacattgggtcaggtgctggtgttttgggtccctggaacaaaaagagcttggaaact
gagtcagatagtgctacttggggttctagtgacaaaactaaatcaggtgctgctgcatgg
agttcttgggacagaaaaaacatggaaactgatgcttggggttcccaggtcaaaaagaaa
tctgacactgagtcaggtcctgctgcttggggtgcttgggacacaaagaaatcggaaact
gaatcaggtcttgctggttggggtaccgcggacaaaaagaattcggaaactgaatcaggt
cctgctgcttggggttcttggggacagccaagtcccactgcagcagacaatgataccaat
gaagatgatggaaatccgtgggtttccttgaaggagaccaaaagtagagagaatgatgat
aaagagagaatccagtggggaaatccagccaagaaatttccatctaatggctcacatggt
ggctggtccaatggtggtggtgcagactggaaaggaaaaaggaaccatactcctaggcca
ccaagatctgaggataatttggctcccatgtttacagcaacgagacagcgcttggactca
ttcacctctgaggagcaagagcttctctcagatgttgagccagtcatgaggactctcagg
aaaataatgcatctgtctgggtaccctgatggagacccaatttctgatgatgacaagacg
tttgtcctggagaagattttgaacttccatcccgaaaaagagaaaaagctcggctctggt
gttgatttcatcacggttgataagcacaccacattctcagatagcaggtgcttctttgtt
gtttcaactgatgggaccaaacaggacttttcatacagaaaatccctaaacaactatttg
atgacgacataccccgaccgcgctgaagaattcatagacaaatactttccgaaacctcgg
cagactcaagctcagtctccatctcaggctcaggctcattctccatctcagactcaggct
cagtctcagtcttcgtctcagaatcagactcagactccatctccgtctcagactcaggct
caatctccctctcagactcagtccccgtcccagactcagacataa

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