Camelina sativa (false flax): 104785878
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Entry
104785878 CDS
T05044
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
csat
Camelina sativa (false flax)
Pathway
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104785878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104785878
03019 Messenger RNA biogenesis [BR:
csat03019
]
104785878
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104785878
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104785878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
104785878
NCBI-ProteinID:
XP_010509467
LinkDB
All DBs
Position
5:6836395..6841863
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AA seq
975 aa
AA seq
DB search
MDNSRRPFDRSRDPGPMKKPRLSEEPIRPVNSNVRQFSSQRTLGTAAAVTVPQPAASRFR
VSGRETESNIVSDPSREAYQPQPVHPHYELVNQYKSALAELTFNSKPIITNLTIIAGENV
HAAKAVVSTICNNILEVPSDQKLPTLYLLDSIVKNIGRDYIKYFGARLPEVFVKAYRQVD
PPMHSNMRHLFGTWKGVFHPQTLQLIEKELGFNAKSDGSAAVVSTARGDPQSQRPPHSIH
VNPKYLERQRLQQSGRTKGMVTDVPEIEPSLTRDSDRLERVSSIASGGSWIGSAKVNTIR
RPSEPLYEKDIESIAGEYDYASDLPHNSRSVIKKVSSRVTDDGCEKQWYGSMSRGPDLIS
DQRDGLHTKSRTSNYGMARLENLESSGPSRNIGVPYDSWKNSEEEEFMWDMHSRLSETDV
ATINPKNELHAPDESERLGSETHLIKRPRFSALDPRFDPVNSTNTYSNEQKDPSIFGHWT
PSPQSLHDSEVFSSINATSTAARKGIQPQPRIVGSGILPSSDRQSPLHDSTSKQNVTKQD
VRRAHSLPQRDPRASRFPAKSQNVPRDDSVRLPSLSSQFKNANMRELPDASQVGIFDSKS
ATENAPDLSIASEATGQSNMSDLLEAVMKSGILSINSTCGALKESSQNEVLAALSAATKP
KTLPIPVAGDNLLARLKVEQSSAPLVSCAASLAGITSVQTSKENSKAKENSKAADPLSSL
LSSLVSKGLISASKTELPSPPSITQDHSPDHSTNSSMSVSVVPSDAQPSVSVKKGPSTAP
KVKELVAPSETTKNEPEDLIGLKFRADKIREVHPLVISSLFDDIPHLCTSCGIRLKEKEE
LDRHLELHEKKKLELSGTNSKCRVWFPKVDDWIAAKSGELEPEYEEILSEPESAIEDSPA
VAADETQCACILCGEVFEDYFSQETAQWMFKGASYLTDSPANSEASGPIVHARCLTTSSL
QSLEVGNAIKQEIVE
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggataattcgcgtaggccgtttgatagatccagagatccaggtccgatgaagaaaccc
aggctcagcgaggaaccaatccgacctgtaaactccaacgtgcggcagttttcgtcgcag
agaacgcttggtacggcagcggcggtgacagtaccacaaccggcggcgtcgagatttcga
gttagtggcagagaaactgagagtaacattgtcagtgatccgagccgagaggcttaccag
ccacagccggttcatccacattacgagcttgtgaaccagtacaagtcggcactggctgag
ctcactttcaactcgaagcctataataacaaaccttacgataattgccggagagaatgtt
catgctgctaaagccgtcgtttccactatttgcaacaacatcctcgaggtaccaagtgat
cagaagctgccaacactgtacctgttagacagcattgtgaagaacatcggaagagattac
attaagtactttggtgccaggctgcctgaggtatttgttaaggcttacaggcaagttgac
cctcctatgcattctaatatgcggcatctctttggaacctggaaaggagtctttcatccg
caaacacttcaacttatagagaaagaacttggttttaatgctaaaagtgatggttcagca
gctgttgtatccacagccagaggtgatccgcaatctcagcgcccgccacatagcatccat
gtgaatcccaagtatctagaaaggcagcgccttcaacagtctggacggacaaaaggaatg
gttactgatgtccctgagatcgaacccagtttgactagggattcagatagactggagaga
gtttcaagcatagcatctggaggctcgtggataggttcagctaaagtaaataccattcgg
cgacctagtgaacccctctacgagaaagatattgagtcaatagcaggggaatatgattac
gcttctgatctaccccataactctagatcggtgattaagaaagtcagttcaagggttact
gatgacggatgtgagaaacaatggtacggatctatgagcaggggtcctgatctgatttct
gaccaaagggatgggttacatactaaaagcagaacttccaactatggtatggctaggcta
gaaaatttggaatcaagtggtcccagcagaaatataggtgtaccttatgatagttggaaa
aactcggaggaagaagagtttatgtgggatatgcactcaaggttatcagaaactgatgtt
gccactatcaacccaaagaatgagcttcatgcaccagatgaatcagagagactgggatcg
gaaacccaccttattaaacgaccaaggttttcagctctggacccaaggttcgacccagtg
aattcaacaaatacatattccaacgaacaaaaagatccaagtatttttggccactggacg
ccttctccacaatctttgcatgattcagaagttttttcttctatcaatgcaacctctact
gcagctagaaagggaattcagcctcaacctaggattgtcggctctggaattttgccaagc
tcagatagacagtcgcctttacatgattcaacttctaaacagaatgtgaccaagcaagat
gttagaagagctcattcccttcctcaacgtgatccaagggcttcccggtttccagcaaaa
tctcagaatgtccccagggatgactctgtacggctcccatctttaagtagtcagtttaaa
aacgcaaatatgcgtgaactacctgatgcatctcaagtgggaatatttgactctaagtca
gcaactgaaaatgcgccagacctttctattgcctctgaagctacaggacaatccaacatg
agtgatttgctggaagctgtcatgaagagtggaatcctttctattaattcaacatgtggt
gcactcaaggagagttctcagaatgaggtactagccgccctctcagcagccactaagcca
aagactttgccaattccggtggctggtgacaatttattagctcgtttaaaagttgaacaa
tcctctgcaccacttgtctcatgtgcagcgtctcttgctggcatcacatcggtacaaacg
tcaaaagagaatagtaaggccaaagagaatagtaaggccgcagatcctctttcaagcctc
ttgagctcattagtttcaaagggtttgatatctgcttcaaagacagagctgccatcgcct
ccttccataacgcaggaccatagtcctgatcattccaccaatagctctatgtctgtatct
gtggttccatcagatgctcagccatccgtttcggtgaaaaaggggccatctactgcccca
aaggtaaaagagttagttgcaccatctgaaacaacaaaaaatgaacccgaagacctcata
ggattgaagtttagggcagacaaaatccgcgaagttcaccccttggtcattagtagtctc
tttgatgacattccacatctctgcacctcctgcggcattcgccttaaagaaaaggaagaa
cttgataggcacctggagctgcatgaaaagaagaagctcgaactcagtggcacaaacagt
aaatgtagggtttggtttccaaaggttgatgactggatagcagcaaaatctggagagtta
gaacctgaatatgaggaaattctaagtgaacctgagagtgctattgaggatagtccagcc
gtagctgctgatgagacccaatgcgcatgtatattatgtggagaagtatttgaggattat
ttcagtcaagaaacggctcaatggatgttcaagggagcttcttacctgaccgattctcca
gccaacagtgaggctagtggtcctatcgttcatgcgcgttgtttgaccacgagttcattg
cagagcttggaagttggaaatgcaatcaagcaggaaattgtcgagtag
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