Camelina sativa (false flax): 104785940
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Entry
104785940 CDS
T05044
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104785940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104785940
03012 Translation factors [BR:
csat03012
]
104785940
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104785940
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104785940
Translation factors [BR:
csat03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104785940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
NACHT
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
104785940
NCBI-ProteinID:
XP_010509535
LinkDB
All DBs
Position
5:complement(7167917..7175195)
Genome browser
AA seq
1050 aa
AA seq
DB search
MQQVVSLSSCISTLRFLLPSKLSPLRPLFHIAAMPPYGPNSQGGRRGGGFSSGRGGGARR
GGGRGGGGGGRGGGGGGRGEQRWWDPVWRAERLRQQQVEMEVFDENEWWNKIEQWKTGGE
QEMLIKRNFSRGDQQTLSDMAYQLGLHFHAYNKGKALVVSKVPLPDYRADLDDRHGSTQK
EITMSTETERKLGSLLKTTQESGSSSSSTSAVHDQQDRTATLGLKRPDSASKLPDSLEKE
KFSAAHKERQEKLKATESVKALQAFREKLPAFRMKEGFLKSVSENQVLVVSGETGCGKTT
QLPQFILEEEISSLRGADCNIICTQPRRISAISVASRISAERGEPIGESVGYQIRLESKR
SDQTRLLFCTTGVLLRRLIEDPNLTNVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLR
LILMSATINADMFSTYFGNAPTMHIPGFTFPVAELFLEDVLEKSRYSIKSSDSGNYQGNS
RGRRRDSESKKDDLTTLFEEIDINVHYKSYSSATRLSLEAWSGAQIDVDLVEATLEHICR
HEGDGAILVFLTGWDEISKLLEKINGNRLLGDSSKFLILPLHGSMPTVNQREIFDRPPPN
KRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKVACLLPSWISKASAHQRRGRA
GRVQAGVCYRLYPKVIYDSFPQYQLPEIIRTPLQELCLHIKSLQVGSIGSFLAKALQPPD
ALAVENAIELLKTIGALDDIEDLTPLGRHLCTLPVDPNIGKMLLIGAIFQCVNPALTIAA
ALAYRSPFVLPLNRKEEADDAKRYFAGDSCSDHIALLKAYEGYRDAKRGGNEKDFCWQNF
LSPVTLRMMEDMRNQFLDLLSDIGFVDKSRPSAYNQYSQDMEMVSAVLCAGLYPNVVQCK
RRGKRTAFYTKELGKVDIHPGSVNARVNLFSLPYLVYSEKVKTTSVYIRDSTNISDYALL
MFGGNLIPSKTGEGIEMLGGYLHFSASKNVLELIQRLRGEVDKLLNKKIEDPSLDITVEG
KGVVSAVVELLRSRNISEINSLDRSREIIV
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atgcaacaagtagtgtccctctcttcttgtatctccacgcttcgcttccttcttccttct
aaactctctccgcttcgtcctctcttccatatcgctgccatgcctccttacggtcctaat
tctcaaggtggtcgtcgtggcggaggtttttcctccggtcggggcggtggtgctcgtcgt
ggtggtggacgcggcggtggcggcggcggtcgtggcggtggtggtggcggccgtggagaa
cagcgatggtgggatccggtctggagagctgagcgtctgcgccagcaacaagttgagatg
gaagtttttgatgagaatgaatggtggaacaagattgagcaatggaaaacaggaggagaa
caagagatgttaattaagcgtaattttagcaggggagatcagcaaacactttctgatatg
gcttatcagcttggtcttcacttccatgcatacaataaagggaaggctcttgtagttagc
aaagttcctttaccagattatcgggctgatcttgatgatcggcatggatccactcagaaa
gagattacaatgtcgacagagactgagagaaaacttggaagtcttttgaaaacaacacaa
gaatcagggtcttcaagttcatctacttcagctgttcatgatcaacaggaccgtacagca
actcttggcttgaaaagacctgattctgcttccaaattgcccgattctcttgagaaagaa
aaattcagtgctgcacacaaggaaaggcaggaaaagcttaaggcaactgagagtgtaaaa
gcacttcaagctttcagagaaaagctacctgcttttagaatgaaagaggggtttcttaaa
tctgtttcagaaaatcaggtattggtagtttcaggagagaccgggtgtggtaaaacaact
caacttcctcaatttatattggaggaagaaatatcatccctaagaggtgctgattgcaac
ataatttgtacacaacctcgacgtatttctgccatatcggttgcttcacgtatatctgct
gaaaggggtgaacccattggtgaatctgtgggttatcagattcgtctagaatcaaagcgt
tctgatcaaacacgattgctattttgcactactggtgtcttactccggcggctgattgag
gatcctaatctaactaatgtaagccatttgcttgtggatgagattcacgagagaggcatg
aatgaggatttcctactaatcatactacgtgatctccttcctcgacgcccagatttgcgt
cttattctgatgagtgctacgataaacgctgacatgttctcaacatatttcgggaacgct
ccaacgatgcatatcccggggttcacattccctgtggcagagttattcctagaagatgta
ctggagaaaagtcgctatagtattaagtcgtctgattcagggaattatcaaggcaattcg
agaggtaggagaagagactcagaatccaagaaggatgacctgactactctgtttgaggag
attgatatcaatgttcactataaaagttatagttcagccacaagactttctctcgaagca
tggtctggtgcacagattgatgtggatctggtggaggctacacttgaacatatttgccgt
catgaaggtgatggggcgattcttgtcttcctcactggctgggatgagatttcgaaactg
cttgagaaaatcaacgggaacagactgcttggagattctagcaagttcttaattcttcct
ctgcatggttcaatgccgacggttaatcaacgtgaaatttttgaccgtccacctcctaat
aagcggaaaatagttttggctacaaacattgccgagagtagtattacaattgatgatgtt
gtatatgttgtggattgcggtaaagcaaaggaaactagctatgatgctttgaacaaggtg
gcatgtctcttgccatcatggatttcaaaggcttcagcacaccagagacgaggtcgtgct
ggacgtgtccaagctggagtttgctacaggttgtatccaaaagtcatctatgattctttc
ccacagtatcagttaccagaaatcatacggactccactgcaagagttatgcctgcatatc
aaaagtttgcaggttggatccataggatcattcttggccaaggcattgcagccaccagat
gcacttgctgttgagaatgctattgaacttctcaaaacaattggggctttagacgacatt
gaagatcttacaccccttggtcggcatctttgcactctacccgtagacccaaatatagga
aagatgcttctgattggagctatcttccagtgcgtcaatcctgctttgacaattgccgct
gcgctggcatatcgtagcccctttgtcttaccattaaataggaaagaagaagctgatgat
gctaaaagatattttgctggtgattcctgcagtgatcacattgctctgcttaaggcatat
gagggatatcgggatgcaaagcgtggtggaaacgaaaaagatttttgttggcaaaacttt
ctttcccctgtaactctaaggatgatggaggatatgagaaaccagtttcttgatctttta
tcagatataggtttcgtagacaaatcaaggccaagtgcatacaaccaatacagccaagac
atggagatggtaagcgcggttttgtgtgcggggctgtacccaaatgttgtgcaatgcaaa
agaagagggaagcgcactgcattctacactaaagagttgggtaaagttgatatccaccct
ggatctgtcaacgcaagagtaaatctcttctcgctgccgtatttggtctacagcgaaaag
gtgaagacgacaagtgtatatatccgagactcgacaaacatatcagattatgcactcctt
atgttcggtggcaatcttatcccaagcaaaaccggggaaggtatagagatgttgggaggg
tatctccatttctctgcctcgaagaacgtcttggaactgatacagagattgcggggagag
gtggacaagctgctgaataagaagatagaggatccgagtttggacataactgtggaggga
aaaggagtggtttcagctgtggtggagttgttacgcagccgaaacataagtgaaatcaac
tctctcgatcgctctcgggaaataatagtatga
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