Camelina sativa (false flax): 104786406
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Entry
104786406 CDS
T05044
Name
(RefSeq) DNA repair protein RAD50-like isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03440
Homologous recombination
csat03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104786406
03450 Non-homologous end-joining
104786406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csat03032
]
104786406
03400 DNA repair and recombination proteins [BR:
csat03400
]
104786406
DNA replication proteins [BR:
csat03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
104786406
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
104786406
BRCA1-C complex
104786406
NHEJ (non-homologous end-joining)
MRX complex
104786406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
AAA_21
SbcC_Walker_B
Rad50_zn_hook
SMC_N
AAA_29
ABC_tran
Motif
Other DBs
NCBI-GeneID:
104786406
NCBI-ProteinID:
XP_010510122
LinkDB
All DBs
Position
5:complement(10125833..10135103)
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVVTFFRPLTLIVGANGAGKTTIIECLKVSCTGELPPNAR
SGHSFIHDPKVAGETETKAQIKLRFKTAAGKDVVCIRSFRLTQKASKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDESNWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKTFKLKLENLQTLKDAAYKLRESIAQDQERTESSKV
QMLELETSIQKVDAEVHNKEMMLKDLRKLQDQVSRKTAERSTLFKEQQRQYAALPEENED
TIEELKEWKSKFEERIALLETKIRKMEREMDDTQTTISSLHNAKTNYMLEISKLQTEAEA
HMLLKNERDFTIQNIFSRHNLGNVPSTPFSTEVVLSLTNRIKSRLGELEMDLLDKKKSNE
TALSTAWYCYMDANDRWKSIEAQKRAKDEIKMGISKRIEEKENERDTFKSEISSVDVKQT
DEREKQVQLEFERKTKQNSERGFESKIEQKQRDIYSIERKIKTLNRERDVMAGDAKDRVK
LSLWKTEQENLQKKHKKIIDECKDRIRGVLKGRLPPEKDMKKEIVQALRSIEREYSELSL
KSREAEKEVDMLQMKIKEVNNSLFKHKKDTESRKRYVESKLQALKQESVTIDAYPKLLES
AKEKRDEHKRKYNMAIGMREMFEPFEEIARSRHSCPCCERTFTSDEEDSFVKKQRENASS
TVGHLKMLAVGSSNADSVFQQLDKLREVFEEYSKLTSEVIPLAEKTLQEHTEELDQKSQA
LDYVLGISAQIIAEKDSIEALVQPLENADRIFQEIVSYQKQIEDLEYNLDFRGLGVKTME
EILSELNSLQSSKDILHDELEKLRDDQIYMERDISCLQARWHAVREEQAKAANLLRDVTK
AEEDLERLAEEKSQLDLDVKYLTEALGPLSKEKEQLLSDYNDMKVRRNQEYEELAEKKRN
YQQEVEALLKASSKINEYHELKKGERLNDILEKQRLSGTQLQSCEARKNELSGELNRNKD
LMRNQDQLRRNIEDNLNYRTTKAEVEKLTREIELLEEQILNIGGIPAVEAEMVKISRERE
RLLSELNRCRGTVSVYESSISKNRVELKQAQYKDIDKRHFDQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDMDYIRIHSDSEGAGTRSYSYKVLMQT
GDTELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNSESLAGALL
RIMEDRKGQENFQLIVITHDERFAQMIGQRQHAEKYYRVAKDDMQHSIIEAQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagtacggtcgataaaatgctgatcaagggtatcagaagcttcgacccagaaaataag
aacgtcgttactttcttcagacctttaaccctaatcgtcggtgccaacggtgccggcaaa
actacgattatagagtgcttgaaggtatcttgtacaggagagttaccaccgaacgcaagg
tctggtcacagcttcattcatgaccctaaggttgctggggaaacggagacaaaagcgcaa
attaagctgagattcaagacagctgcagggaaggatgtggtatgtataaggtcatttcga
ttgacacaaaaggcttcaaagatggagtacaaggcaattgagagtgtgcttcaaaccatt
aatcctcacactggagagaaagtatgtctcagttacagatgcgctgacatggatagggag
ataccagctttgatgggtgtgtccaaagctattttagaaaacgtcatatttgtgcatcaa
gatgagtctaactggccactgcaagatccttctactttgaaaaagaagtttgatgacatt
ttctcagccaccagatatacaaaggctctagaagttattaagaaacttcacaaggatcaa
gctcaggaaataaaaacttttaagttaaagttggaaaatctgcagaccttgaaagatgca
gcttataagcttcgtgagagcattgctcaagatcaagaaaggacagagtcttctaaagtt
cagatgttggaactggaaaccagcattcagaaagtcgatgctgaagttcataataaggaa
atgatgttaaaagatctgagaaagctacaggaccaagtatcaagaaaaactgccgagagg
agcaccttgtttaaggagcagcagagacagtatgcagcattacctgaggaaaatgaagat
accattgaagaattgaaagaatggaaaagcaagtttgaagaaagaattgctcttttggag
accaaaattcgaaaaatggagagagagatggatgacacacaaactacaatttcttcgctt
cacaatgcaaaaactaactatatgctggagatcagcaagctacaaacagaagctgaagct
catatgctgctgaagaatgaaagagattttaccatccagaatattttttctcgtcacaat
ttaggaaatgttcctagtacccccttcagtacagaggtagttttgagtctcacaaatcga
ataaaatcaagactgggtgaacttgagatggacttgcttgataagaagaaatcaaatgaa
actgctctaagtacagcttggtattgctatatggatgctaatgaccgttggaaaagcatc
gaagctcagaaacgagctaaagatgaaatcaagatgggcatatcaaaacgcatagaagag
aaagaaaatgagcgtgatacatttaaatctgaaatttcctccgtggatgttaaacaaact
gatgaaagagagaaacaagtgcaacttgagtttgagagaaagactaaacagaattctgaa
agggggtttgaatccaaaatagaacagaaacagcgtgatatatacagcatagaacgtaaa
attaaaacactgaatcgagaaagggacgttatggctggtgatgctaaagatagagtgaaa
ttgtctttatggaagacggaacaggagaatcttcagaagaaacacaaaaagataatagat
gagtgcaaggatcgaattagaggggtgctgaaggggagattgcctcccgagaaggatatg
aagaaggaaatagttcaagctctgaggtcaattgaaagggaatatagtgagctgagtttg
aaatcccgggaagcagaaaaggaggtcgacatgttgcagatgaagataaaagaagtaaac
aatagtctattcaagcataagaaggatacagaatcaaggaagagatacgttgagtccaag
ctccaggccttaaaacaggaatcagttaccattgatgcttatcccaaattgttggagtca
gctaaggagaaaagagatgaacataaaagaaagtataacatggcaattggaatgcgcgag
atgtttgaaccttttgaggagatagcacgttcacgtcattcttgtccttgctgcgagcgc
acttttacatctgacgaagaggatagctttgttaagaagcaaagggaaaatgcttcaagc
acggtggggcatcttaaaatgttagcagtggggtcttccaatgctgactctgtatttcag
cagctggacaaactacgggaagtttttgaagagtattcgaaactaactagtgaagttatt
cctctcgctgagaaaactttgcaagagcatacagaagagctggaccaaaagtctcaagct
ctcgattatgtattaggaatctcagcccaaataatagctgaaaaagactcaattgaagca
ctggtgcagcccctggaaaatgctgataggatctttcaggaaatcgtatcctaccaaaag
caaatagaagatcttgaatataatctcgatttcaggggtcttggggttaaaactatggaa
gaaatcttgtcagaattaaatagcctccaaagcagcaaggatatattgcacgatgagctg
gagaaacttagagatgaccagatttacatggaacgtgatatatcatgcctccaggccaga
tggcatgcagtaagggaggagcaggctaaggcagccaatttgttacgcgacgttacaaag
gcagaagaagacctagagcgtttagccgaggagaaaagtcaacttgaccttgacgtgaag
tatttgaccgaggcacttggcccgttgtccaaggaaaaggagcagttgctgagtgactac
aatgatatgaaggttagacgtaatcaagagtatgaagaactggctgagaaaaagagaaac
taccaacaggaagttgaggcattactcaaggccagttctaagataaatgagtatcatgaa
ttgaagaaaggagagcgcttaaatgatattttagagaagcagcggctgtccggaactcag
cttcagagctgtgaagctagaaagaatgaactttcaggtgaactgaacagaaataaagac
ttgatgcggaatcaagatcaactcagaagaaatatagaggataatttgaactaccggaca
acaaaagcagaagttgagaaacttacacgtgaaattgaattattggaagagcaaatattg
aatattggtgggattcctgcagttgaagctgaaatggtaaagatatcgcgggaaagggaa
aggcttctttcagagctgaaccggtgtcgtggaacagtgtctgtttacgagagcagtatt
tcaaaaaacagagtagagctaaaacaggcacaatacaaggacatagataagcggcacttt
gatcaactgatccagctaaagacaactgaaatggcaaataaagacttggatagatactac
aatgcccttgacaaagcactaatgcgattccacacaatgaaaatggaggaaataaataag
attataagggaattgtggcagcagacatacagaggtcaagatatggattacatacgaata
cactcagattccgaaggtgcaggcacccgctcttacagctacaaggttcttatgcagact
ggtgatacagaacttgaaatgagaggaagatgcagcgcaggtcaaaaggttcttgcttca
ttgataataaggttggctttagccgagacattttgcttaaactgtggaatattagccctt
gacgagccaactacaaacctggatgggcccaattcagaatctcttgcaggagctcttctt
aggatcatggaagacagaaagggccaagagaatttccaactaatagtcattacccatgat
gaacgcttcgctcaaatgattggccaacggcaacatgctgaaaagtattaccgggtcgca
aaagatgatatgcaacacagcataatcgaggctcaagagatctttgattga
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integrated database retrieval system
