Camelina sativa (false flax): 104786554
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Entry
104786554 CDS
T05044
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104786554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104786554
03012 Translation factors [BR:
csat03012
]
104786554
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104786554
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104786554
Translation factors [BR:
csat03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104786554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
R3H
HA2_C
Ank_5
HA2_N
AAA_22
nSTAND3
Ank_2
AAA_19
ATPase
NPHP3_N
Ank
AAA_7
Rad17
Sigma54_activat
T2SSE
AAA_11
Motif
Other DBs
NCBI-GeneID:
104786554
NCBI-ProteinID:
XP_010510286
LinkDB
All DBs
Position
5:11479839..11487943
Genome browser
AA seq
1297 aa
AA seq
DB search
MGNKRFRSDNAAGKPTSVEATRIWASKVIEDFRASGNQVYTFEHNLSNNERGVIHQMCRK
MGIQSKSSGRGEQRRLSIFTSRHKNGKNKEANEKSNKEKLKCVSFPPGADAILQDLFTHY
PPCDGDTAATSFNKYSGHSGKQGQWKDDFFAKPKISSEEILEKVASLSSRLKKDKALKEI
AKLRSKLPITSFRDAITSAVESNQVILISGETGCGKTTQVPQYLLDHMWSSKGETCKIVC
TQPRRISAMSVSERISCERGESIGENIGYKVRLQSKGGRHSSVVFCTNGILLRVLVGKGS
VSCVSDITHIIVDEIHERDCYSDFMLAIIRDLLPSNPHLRLILMSATLDAERFSGYFGGC
PVVRVPGFTYPVRTLYLEDVLSILKSGGDNHLSSANLSIPDHKVDLTDEDKLALDEAIIL
AWTNDEFDALLDLVSSSGSHEIYNYQHESTWLTPLMVFAGKGRISDVCMLLSSGADWNLK
SKDGLTALELAETENQLEAAQIIREHAGNTQSNSQQGQQLLDKYMATINPEQVDVSLILQ
LMRKICGDSEDGAILVFLPGWDDINKTRQRLLENPFFADSAKFDIICLHSMVPAGEQKKV
FNRPPRGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKANA
KQREGRAGRCQPGICYHLYSRLRAASMPDFKVPEIKRMPVEELCLQVKILDPNCKTNDFL
QKLLDPPVDQSIANALSILQDIGALTPQEELTELGEKFGHLPVHPLISKMLFFAVLVNCL
DPALTLACAADYKEPFTMPMSPVERQKAAAAKLELASLCGGDSDHLAVVAAFECWKIAKE
RGLSAEFCSQYFVSPSAMKMLDQMRSQLESELKRHGIIPNDISSCSQNSRDPGILRAVLA
VGLYPMVGRLCPAFGNNRRTIVETASGAKVRVHSLSNNFNLSSKKYDESLVVFDEITRGD
GGMHIRNCTVVRDLPLLLVSTEIAVAPTVSSDSDDSDEEEEDEEGGANTNADGMDIHEED
SSSGAKMMSSPENSVKLVVDRWLPFRTTALEVAQMYILRERLMASILFKVTHPREHLPPH
LGASMHAIACILSYDGHAGLSNPPESMGPKHSRTEMYDTGGWEEKPSSFLNSLFWSLSLK
ENKHFSHTNRNRQHDYNMAPTEAASIPRQQNKQRNPKSANNADLGKKKGKMFVNPTNGIN
QPEAASTAKHSKQKSANSSSSGNKKENMPSDQANGYKQPNAPPRGAAASVAKNQSIKKNK
TRSGNNSDSGKKKELYVPKVDIHKRQREDKAEHKGNA
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atggggaacaagagattcaggtctgataatgcagcagggaagccaacttctgtcgaagct
actaggatttgggcttctaaggttatcgaagactttagagcctctgggaatcaagtttac
acgtttgagcataatctatcaaataacgaacgtggcgtgattcatcagatgtgccggaaa
atgggtattcaatcgaaaagttctgggcgtggagaacaaaggcgtctttcaatattcaca
agcaggcacaaaaatgggaagaacaaagaagccaatgagaaatcgaacaaagaaaagctc
aaatgtgtgtcatttccgccaggggcagatgctattctacaggatttatttactcactat
ccaccttgtgacggagacactgctgccacatcatttaacaagtactccgggcactcgggt
aaacaaggacaatggaaagatgattttttcgcgaaaccaaagattagcagtgaagagatt
ctagaaaaagtggcatctttgagttctagacttaagaaggacaaagctcttaaggagatc
gcgaagctgcggtcaaagcttcccatcacatcctttagagacgcaattacatctgcagtg
gaatccaatcaggttattctcatttctggtgaaactggttgcgggaaaactactcaggtg
cctcaatatcttttagaccatatgtggtcaagcaaaggagaaacttgcaaaattgtttgc
acccaacctcgtcggatatccgcgatgtcagtttcggaaagaatatcttgtgaaagaggt
gagagcattggagaaaacattggttacaaggttcgactccaaagcaaaggtggaaggcac
tcatcagttgtattctgcaccaatggcattctcctgagggtgcttgtaggcaaaggctct
gttagctgtgtttccgacataactcacatcattgtggatgaaatccatgaaagggattgc
tactctgatttcatgttggcaattataagggacttacttccgtcaaatcctcatcttcgt
ctgattctcatgagtgctacacttgatgccgagagattttcgggatattttggaggctgc
ccagttgtccgtgtccctggattcacttatccagtgagaaccttgtatttggaggatgtt
ctctctattctgaagtcaggtggagataatcatctaagctctgccaacttgagtatacca
gaccacaaggttgatttgacggatgaagataaacttgctttagatgaagcaatcatcttg
gcttggacaaatgacgagtttgatgccctcttagatctagtttcttctagtggaagtcat
gagatctacaattatcagcacgaatcaacctggctaacaccactaatggtctttgctgga
aagggcaggatcagtgatgtctgcatgctcctctcatctggtgcagactggaacttaaag
tctaaagatggtttgaccgcattagaattggcagaaacagagaatcaactagaagctgct
cagataatcagggagcatgcaggcaatacccagtctaattctcagcaaggacaacagtta
cttgataagtacatggcgacaatcaacccagagcaggttgatgtgagtcttatactgcag
ttaatgaggaaaatatgtggcgattcagaagatggtgccattcttgtttttctacctgga
tgggatgacataaataaaacaagacagaggttacttgagaaccctttctttgcagatagt
gctaaatttgacattatttgtcttcactcgatggtaccagcaggggaacagaagaaagtt
tttaatcgcccccctcgaggttgtcgcaaaattgtgcttgcgacaaatattgctgaatca
gcagttaccattgatgatgtggtttatgtgatagatagtggccggatgaaggaaaagagc
tatgatccttacaataatgtttcaacgctccaatcttcttgggtgtcaaaagcaaatgca
aaacagcgtgagggtcgtgcaggccgctgccaacctggtatttgttatcatctctattct
agacttcgggcagcctctatgccagattttaaagttcctgaaattaagaggatgcctgta
gaagaactctgcttacaggttaagatacttgatccaaattgcaaaactaatgatttcctt
cagaaacttttggacccgcctgttgatcaaagtattgcaaatgccttaagcatactacag
gacatcggggccctgacacctcaggaagagctgacagaacttggagagaaatttggtcat
ctcccagttcatcctttgattagcaaaatgcttttcttcgctgtattagtaaactgtctg
gatccagcacttactctggcatgtgcagccgactacaaggaaccatttacgatgcctatg
tcgccagttgaaagacaaaaagctgctgctgcaaaacttgaacttgcgtcactttgtgga
ggtgacagtgatcaccttgcagttgttgctgcctttgaatgctggaaaattgcaaaagaa
agaggtctttcggcagagttttgctctcagtacttcgtctctcctagtgctatgaagatg
ttggatcaaatgcgtagccaacttgagtcggaacttaaaagacatgggattattcccaac
gatatttcaagctgtagccagaattcgcgtgatcccggtatactccgtgctgttctagca
gtaggattgtatcctatggtgggaagattgtgcccagcttttggtaataatcgaagaact
atagtagagactgctagtggtgccaaagttcgtgtgcattcactgtcaaacaacttcaac
ttgtcgtcgaaaaagtatgatgaatctttggttgtttttgatgagatcacacgtggagat
ggaggcatgcacataagaaactgtactgttgttcgggatcttcctttgttacttgtctca
acagagatagctgtggctcctacagtgagcagtgattctgatgatagtgatgaagaagaa
gaggacgaagaaggaggagctaatactaatgcagacggaatggacatacatgaagaagat
agtagcagtggagcgaaaatgatgtcttcacctgaaaattcagtcaagttggtagttgat
cgttggctgcctttcagaaccacagcccttgaagttgctcaaatgtacattttgcgggaa
cgactaatggcgtctattttgttcaaggtaacacatccacgtgaacatctgccgcctcat
ctcggagcttctatgcatgcaatagcttgtattctctcatatgatggtcacgcgggactt
tcaaatccaccggagtctatgggaccaaaacattcgaggactgagatgtatgataccggt
ggatgggaagagaaaccaagctctttcctaaactctctcttttggtctctgagtttgaaa
gagaacaagcattttagtcacacgaacaggaatcggcagcatgactacaacatggctcca
acagaagctgcatcgatacctaggcagcaaaacaagcaaagaaaccccaaatcagccaac
aatgctgatttgggtaagaagaaagggaaaatgtttgttaatcccaccaatgggattaac
caaccagaagctgcttctacggcgaagcattcaaagcaaaaatcagccaacagttcgagt
tcgggtaacaagaaagagaacatgccttctgatcaggccaatggatataagcaaccaaac
gcacctccaagaggagctgctgcgtcagtggctaagaatcaaagcattaagaaaaacaag
accaggtcaggcaacaactcagattccggtaagaagaaagaactgtatgttccaaaggtt
gatatccataaaaggcagcgtgaagacaaagcagaacataagggaaatgcatga
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