KEGG   Camelina sativa (false flax): 104787331
Entry
104787331         CDS       T05044                                 
Name
(RefSeq) protein PAT1 homolog 1
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
csat  Camelina sativa (false flax)
Pathway
csat03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104787331
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csat03019]
    104787331
Messenger RNA biogenesis [BR:csat03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     104787331
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     104787331
SSDB
Motif
Pfam: bVLRF1
Other DBs
NCBI-GeneID: 104787331
NCBI-ProteinID: XP_019083034
UniProt: A0ABM1Q8E6
LinkDB
Position
1
AA seq 782 aa
MERSDSRDLYNFVRASSLDKSSTLFDASQYEFFGQNLDEMEIGGLDDDGVIAPVLGHTDD
DEYHLFDKGEGGGLGSLSEIDDLATTFAKINRNVTGPKHPGVIGDRGSGSFSRESSSATD
WTHDVELTSWLDEQDQEAKRWSSQPQSFGHSKPLYRTSSYPQQQPQLQHYNSEPIILPES
NFTSFPPPGSRSPQASPGNLLRAPSLPGGSQLTYSAPSPLSNSSFHPSVLSQGPQYGGNL
ARYASCGPTLGNMVQPHWVTDPGLMHGDHSGLLHSLVQQQHQQLPPRNALMSQHLLALQQ
RQSYAQLAALQSQLYSSYPSPSRKVPFGVGEVREHKHKSSHRSRKNKGLSQQASDAASQK
SESGLQFRSKHMTSEEIETILKMQHSNSHSNDPYVNDFYHQAKLAKKSAGSIKAVSHFYP
AQLKDHQPKSRNSSEQHPQVHVDALGKITLPSVRRPRALLEVDSSPGDGSGDHKGSVKHL
EQEPLVAARVTIEDALGVLIDIVDIDRTLQNTRPQDGGAQIKKKRQILLEGLATALQLAD
PFSKTGQKSGMSAKDDVVLLRIATLPKGRKMLTKYLQLLVPGTEIARVVCMAVFRHLRFL
FGGLPSDTLAAETISNLAKAVTVCVQAMDLRALSACLAAVVCSSEQPPLRPIGSSAGDGA
SVVLISLLERAAEVVVVPRVMHGNPNDGLWRASFDEFFNLLTKYCRSKYETIRGQNQGSA
ADVLELAIKREMPAELLRASLRHTNDVQRNYLLNFGRKPSAISESASHARGGGQINSESV
RG
NT seq 2349 nt   +upstreamnt  +downstreamnt
atggagagatccgattccagggatttgtacaactttgttcgtgcttcgtccttagataag
agcagtacactctttgatgcctcacaatatgagttttttggtcaaaatctagacgaaatg
gaaattgggggtcttgacgatgatggagtgatcgctcctgttcttggacatactgatgat
gatgagtatcacttgtttgataaaggagagggtggaggtttaggatcactatctgagatc
gatgatcttgcgacaacttttgcaaagataaacagaaatgttaccggacccaaacaccct
ggagttatcggtgatagaggatcaggatccttttcaagagagagttcctctgctaccgat
tggacacatgatgtagagctcacaagctggttggacgaacaagatcaagaagctaagaga
tggtcctcacagccacaatcatttggtcattcaaaacctttgtacaggacatcctcctat
cctcagcagcaaccacagctgcagcactacaatagcgaaccgataatcttaccagaatca
aatttcacctcatttcccccgcctggtagcagatctccgcaggcttcacccggaaacctc
cttcgcgctccttctcttcctggtggttctcagttgacctattctgcaccttcaccactg
tcaaattctagttttcacccctccgtattgtcgcaaggtccccagtatggtggtaatttg
gctagatatgcctcgtgcggtcctacgcttggtaacatggtgcaacctcattgggtcact
gatcctggtcttatgcacggagatcattctggtttgttacatagtttggtgcaacaacag
catcaacagttgcctcctcgaaatgctcttatgtcgcaacatttgctcgccctccagcag
agacaatcatatgctcagcttgccgctctacaatcccaactgtatagttcctatccttcg
ccatcacgtaaagtcccttttggagttggtgaagttagggaacacaaacataagtcatct
catagaagtcgaaagaacaaaggcctctctcaacaggcatcagatgcagctagtcagaaa
agtgaaagtgggctgcagtttagatcaaaacacatgacatcagaagaaatagagactatc
ctcaaaatgcagcattccaattcacacagcaatgatccttatgtcaatgatttttaccac
caagctaagcttgccaagaagtctgccggatctattaaagcagtctctcacttctatccc
gctcagttgaaggaccaccagcctaagtctcgtaatagttctgaacagcatccacaagtt
catgtagatgctcttggaaaaattacgcttccttctgtccgcaggcctcgtgccttgctc
gaagttgactcttctcctggcgatggaagcggggatcataagggctcagtaaaacatttg
gaacaggaacctcttgttgcagctagggttacgattgaagatgctcttggagttcttatt
gacatagttgatattgacaggactctacaaaacacaagaccccaggatggcggtgcccaa
atcaagaagaagcggcagatcctgctagaaggtttagcgacggcacttcaacttgctgat
ccgttcagcaaaactggtcagaaatccgggatgagcgctaaggatgatgttgtccttcta
cgtatagcgactctccccaagggccggaaaatgcttacgaagtatttgcaacttctagtt
ccaggtactgagattgctcgagttgtttgtatggctgtattccgccacttgagatttctg
ttcggcggcctgccttcagatactctagcagcagagacgatatctaatcttgccaaagca
gtcacggtttgtgttcaagcaatggacctccgagcactgagtgcttgccttgcagctgta
gtttgttcttcagagcagccacctctgcgtcctattggaagttctgctggggatggtgct
tcagttgtcttgatatctcttcttgagagagctgctgaagtagtggtggttcctcgagtc
atgcatgggaatcctaatgatggtctctggagagcctcatttgatgaattcttcaacctt
cttaccaaatactgcagaagcaagtatgagacgatccgaggtcagaaccaaggtagtgca
gcggatgttttggagctggcgataaagagggaaatgcccgctgagcttttacgtgcgagt
ctgcgtcacaccaatgacgtccaaaggaactatttattaaactttggtcgtaaaccgtcg
gcaattagtgagtcggcgtctcatgcaaggggtggtggtcagatcaactctgaatctgtg
aggggttaa

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