Camelina sativa (false flax): 104787331
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Entry
104787331 CDS
T05044
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104787331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104787331
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104787331
mRNA degradation factors
5'-3' decay
Decapping complex
104787331
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bVLRF1
Motif
Other DBs
NCBI-GeneID:
104787331
NCBI-ProteinID:
XP_019083034
UniProt:
A0ABM1Q8E6
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Position
1
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AA seq
782 aa
AA seq
DB search
MERSDSRDLYNFVRASSLDKSSTLFDASQYEFFGQNLDEMEIGGLDDDGVIAPVLGHTDD
DEYHLFDKGEGGGLGSLSEIDDLATTFAKINRNVTGPKHPGVIGDRGSGSFSRESSSATD
WTHDVELTSWLDEQDQEAKRWSSQPQSFGHSKPLYRTSSYPQQQPQLQHYNSEPIILPES
NFTSFPPPGSRSPQASPGNLLRAPSLPGGSQLTYSAPSPLSNSSFHPSVLSQGPQYGGNL
ARYASCGPTLGNMVQPHWVTDPGLMHGDHSGLLHSLVQQQHQQLPPRNALMSQHLLALQQ
RQSYAQLAALQSQLYSSYPSPSRKVPFGVGEVREHKHKSSHRSRKNKGLSQQASDAASQK
SESGLQFRSKHMTSEEIETILKMQHSNSHSNDPYVNDFYHQAKLAKKSAGSIKAVSHFYP
AQLKDHQPKSRNSSEQHPQVHVDALGKITLPSVRRPRALLEVDSSPGDGSGDHKGSVKHL
EQEPLVAARVTIEDALGVLIDIVDIDRTLQNTRPQDGGAQIKKKRQILLEGLATALQLAD
PFSKTGQKSGMSAKDDVVLLRIATLPKGRKMLTKYLQLLVPGTEIARVVCMAVFRHLRFL
FGGLPSDTLAAETISNLAKAVTVCVQAMDLRALSACLAAVVCSSEQPPLRPIGSSAGDGA
SVVLISLLERAAEVVVVPRVMHGNPNDGLWRASFDEFFNLLTKYCRSKYETIRGQNQGSA
ADVLELAIKREMPAELLRASLRHTNDVQRNYLLNFGRKPSAISESASHARGGGQINSESV
RG
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggagagatccgattccagggatttgtacaactttgttcgtgcttcgtccttagataag
agcagtacactctttgatgcctcacaatatgagttttttggtcaaaatctagacgaaatg
gaaattgggggtcttgacgatgatggagtgatcgctcctgttcttggacatactgatgat
gatgagtatcacttgtttgataaaggagagggtggaggtttaggatcactatctgagatc
gatgatcttgcgacaacttttgcaaagataaacagaaatgttaccggacccaaacaccct
ggagttatcggtgatagaggatcaggatccttttcaagagagagttcctctgctaccgat
tggacacatgatgtagagctcacaagctggttggacgaacaagatcaagaagctaagaga
tggtcctcacagccacaatcatttggtcattcaaaacctttgtacaggacatcctcctat
cctcagcagcaaccacagctgcagcactacaatagcgaaccgataatcttaccagaatca
aatttcacctcatttcccccgcctggtagcagatctccgcaggcttcacccggaaacctc
cttcgcgctccttctcttcctggtggttctcagttgacctattctgcaccttcaccactg
tcaaattctagttttcacccctccgtattgtcgcaaggtccccagtatggtggtaatttg
gctagatatgcctcgtgcggtcctacgcttggtaacatggtgcaacctcattgggtcact
gatcctggtcttatgcacggagatcattctggtttgttacatagtttggtgcaacaacag
catcaacagttgcctcctcgaaatgctcttatgtcgcaacatttgctcgccctccagcag
agacaatcatatgctcagcttgccgctctacaatcccaactgtatagttcctatccttcg
ccatcacgtaaagtcccttttggagttggtgaagttagggaacacaaacataagtcatct
catagaagtcgaaagaacaaaggcctctctcaacaggcatcagatgcagctagtcagaaa
agtgaaagtgggctgcagtttagatcaaaacacatgacatcagaagaaatagagactatc
ctcaaaatgcagcattccaattcacacagcaatgatccttatgtcaatgatttttaccac
caagctaagcttgccaagaagtctgccggatctattaaagcagtctctcacttctatccc
gctcagttgaaggaccaccagcctaagtctcgtaatagttctgaacagcatccacaagtt
catgtagatgctcttggaaaaattacgcttccttctgtccgcaggcctcgtgccttgctc
gaagttgactcttctcctggcgatggaagcggggatcataagggctcagtaaaacatttg
gaacaggaacctcttgttgcagctagggttacgattgaagatgctcttggagttcttatt
gacatagttgatattgacaggactctacaaaacacaagaccccaggatggcggtgcccaa
atcaagaagaagcggcagatcctgctagaaggtttagcgacggcacttcaacttgctgat
ccgttcagcaaaactggtcagaaatccgggatgagcgctaaggatgatgttgtccttcta
cgtatagcgactctccccaagggccggaaaatgcttacgaagtatttgcaacttctagtt
ccaggtactgagattgctcgagttgtttgtatggctgtattccgccacttgagatttctg
ttcggcggcctgccttcagatactctagcagcagagacgatatctaatcttgccaaagca
gtcacggtttgtgttcaagcaatggacctccgagcactgagtgcttgccttgcagctgta
gtttgttcttcagagcagccacctctgcgtcctattggaagttctgctggggatggtgct
tcagttgtcttgatatctcttcttgagagagctgctgaagtagtggtggttcctcgagtc
atgcatgggaatcctaatgatggtctctggagagcctcatttgatgaattcttcaacctt
cttaccaaatactgcagaagcaagtatgagacgatccgaggtcagaaccaaggtagtgca
gcggatgttttggagctggcgataaagagggaaatgcccgctgagcttttacgtgcgagt
ctgcgtcacaccaatgacgtccaaaggaactatttattaaactttggtcgtaaaccgtcg
gcaattagtgagtcggcgtctcatgcaaggggtggtggtcagatcaactctgaatctgtg
aggggttaa
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