Camelina sativa (false flax): 104787530
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Entry
104787530 CDS
T05044
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
csat
Camelina sativa (false flax)
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104787530
03036 Chromosome and associated proteins [BR:
csat03036
]
104787530
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
104787530
Chromosome and associated proteins [BR:
csat03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
104787530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
Spt6_S1
HHH_9
HHH_3
SH2
CRA
S1
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
104787530
NCBI-ProteinID:
XP_010511438
LinkDB
All DBs
Position
5:complement(24469727..24473864)
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AA seq
1046 aa
AA seq
DB search
MENAVVSTSPTADGNTVIDSFHQFSGIKWLREKPLSKFEGAQWLLIQKAEEEKLLQVTFK
LPENHMNRLISDCNEHYLSVGVSKYAQLWNEQRKLILEDALHTFLLPSMEKEARSLLTSR
AKSRLLLEYGQALWNKVSAGPYQKKEMDISSDEEVAPRVMACCWGPGKPPNTFVMLDSSG
EVLDVLYAGSLTLRSQNVNDQQRKKNDQDRVLKFMMDHQPHVVALGAVNLSCTRLKDDIY
EVIFQMVEEKPRDVGHGMDDLSIVYVDESLPRLYENSRISGEQLPQQSGIVKRAVALGRY
LQNPLAMAATLCGPGREILSWKLHPLEHFLQVDEKYGMVEQVMVDITNQVGIDINLAASH
EWFFSPLQFISGLGPRKAASLQRSLVRAGSIFVRKDLIMHGLGKKVFVNAAGFLRIRRSG
LAASSSQFIDLLDDTRIHPESYSLAQELAKDIYDQDVRGDSNDDEDAIEMAIEHVRDRPG
SLRKVVLDEYLASKKRENKKETYSNIMRELSCGFQDWRIPFKDPSPDEEFYMISGETEDT
IAEGRIVQASVRRLQGGRAICVLDSGLTGMLTKEDFSDDGRDIVELSERLKEGDILTCKI
KSIQKQRYQVFLICKESEMRNNRHQHNQNVDAYYHEDRNSLQLVKEKARKEKELVRKHFK
SRMIVHPRFQNITADQATEYLSDKDFGESIVRPSSRGLNYLTLTLKIYDEVYAHKEIVEG
GKENKDITSLQCIGKTLKIGEDTFEDLDEVMDRYVDPLVSHLKTMLNYRKFRKGTKSEVD
DLLKIEKGENPSRIVYCFGISHEHPGTFILSYIRSTNPHHEYIGLYPKGFKFRKRMFEDI
DRLVAYFQRHIDDPLQESVPSIRSVAAMVPMRSPADRGSSGGSGWGSSQNEGGWKGNSDR
SGSGRGGDYRNGGGRDGHPSGAPRPYGGRGRGRGRRDDMNGDRQDGNGDWGNNDTGTGDG
GWGSSTGGGWGSESAEKKNEGAGGWGSGSGGGDSGSGGWGNDSGGKKSSEDDGWGNEAGG
KKSDGEGGWGNESSSQKSGGGGGGGW
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atggagaatgcagtagtctcaacaagtccaacagcagatggaaatacagtaatagattca
ttccatcagttttctgggatcaagtggttacgtgaaaagccattgagcaagtttgagggt
gcacaatggcttctcattcagaaggcagaagaggagaaacttcttcaagtaaccttcaag
ctgcctgagaatcacatgaataggctaattagcgactgcaatgaacattatctaagtgtc
ggtgttagtaagtatgctcaactctggaatgagcaaagaaagttaattctggaggatgca
cttcatacttttcttttgccatcaatggagaaagaagcaagatccttgctgactagcaga
gcgaagagtcggttgcttttagagtatggacaggctttgtggaacaaagtttctgcaggg
ccatatcaaaagaaagaaatggacattagctcagatgaggaagttgcgcctagggtcatg
gcatgttgttggggacctggaaagccaccaaatacgtttgtgatgctggattcatcggga
gaggtgcttgatgtgctctatgctggatccctcacattacgatctcaaaatgtcaacgac
cagcaacgtaaaaagaatgaccaggatcgtgttttaaagtttatgatggaccaccaaccg
catgttgtggctttaggagctgtcaatttgtcttgtactcgcctgaaggatgatatttat
gaggtcatattccagatggtggaggaaaagcctagagatgttggacatggaatggatgat
ttaagcattgtttatgtggatgaatcacttcctagactatatgaaaattctcgaatctcg
ggtgaacagctacctcagcagtcagggatcgtgaaacgtgcagttgctcttggacgctat
ctccaaaatccactagcaatggctgccactttatgcggtccaggtagggaaattttgtct
tggaagcttcatcccttggagcattttcttcaggtagacgagaagtacggaatggttgag
caggttatggttgacataacaaaccaggttggaatcgacattaatttggcagctagccat
gagtggtttttttctcctttacagttcatttctggacttgggcctaggaaagctgcatcc
ttgcagaggtcgcttgtgagagctggttcaatatttgttcgcaaggacctgataatgcat
ggacttggtaaaaaggtttttgtaaatgcagccggtttcttgcgcattcgcaggagtggg
ctagctgctagtagcagtcaatttattgacttattggatgacacccgaatacatcccgag
tcatatagccttgcccaagaattggctaaagatatttatgatcaggatgtcagaggtgac
tcaaatgatgatgaggatgcgatagagatggcaatagagcatgtgagagatcggccaggc
tcattgagaaaagtggtccttgatgagtatcttgccagcaagaaaagggagaataagaag
gaaacctatagtaatatcatgagagaattgagctgtggtttccaggattggcggataccc
tttaaagacccaagtccagatgaagaattttatatgatttcaggtgaaactgaagacacc
atagctgagggaagaattgtgcaggctagtgttcggagattacagggtggaagagccata
tgtgtattagattctgggttaactgggatgcttacgaaggaagatttctcagatgatggg
agagatattgttgagttatcggaacgactgaaagaaggcgatatcctgacatgcaagatc
aaatcaattcaaaagcagaggtatcaggtgttccttatttgcaaagaaagtgagatgaga
aacaacagacaccagcataaccagaatgtggatgcttattaccatgaggatagaaacagt
ctccagctagtaaaagagaaagcccgaaaggaaaaagagctagtgaggaagcattttaag
tcccggatgattgtccatcctcgctttcagaatatcactgctgaccaagctacagagtat
ttgtctgacaaagactttggagaaagcattgttcgtccaagttctcgaggactcaattat
ttaactttgacgctcaagatttatgatgaagtttacgctcacaaggagatagttgaaggt
gggaaagaaaacaaggacatcactagcctacagtgtattgggaaaaccctgaaaattgga
gaggacaccttcgaggatctggatgaggtcatggatcgatatgttgatcctttggtatct
catcttaagaccatgctcaactatcggaaattccgaaaggggaccaaatcagaagtagat
gatcttctgaagatcgagaagggcgaaaatccttcaagaatagtttactgctttgggatt
tctcatgaacatccaggcacctttatactgtcttatataaggagcacaaatccacatcat
gagtatataggcttatatcctaagggatttaagttcaggaaaaggatgtttgaggacatt
gataggcttgtggcatacttccagaggcatattgatgacccattgcaggagtcagtgcca
tcaatccggtctgttgctgccatggtaccaatgagaagcccagcagaccgtggctcatct
ggaggaagtggttggggtagttctcagaatgaaggaggctggaaaggaaactcagatcgc
tcaggctcagggaggggtggtgattacagaaatggtggtggacgtgatgggcatccaagt
ggggcgccaaggccatatggtggtcgtggtcgaggcagaggacgaagagatgatatgaac
ggtgacagacaagatgggaatggagattggggtaataacgatactggaactggagatgga
ggttggggaagtagtactggtggcggttggggaagcgagtctgctgagaaaaagaatgaa
ggtgcgggcggctggggtagtgggtctggcggtggcgatagtggtagcggaggttgggga
aatgattctggcggtaaaaagagcagtgaagatgatggttggggaaacgaggctggtggt
aaaaagagcgatggagagggcggttgggggaatgaatccagcagtcaaaagagtggtggc
ggcggtggtggtggatggtga
DBGET
integrated database retrieval system
