Camelina sativa (false flax): 104788412
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Entry
104788412 CDS
T05044
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 12
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104788412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104788412
03036 Chromosome and associated proteins [BR:
csat03036
]
104788412
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104788412
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
104788412
mRNA degradation factors
5'-3' decay
Decapping complex
104788412
Chromosome and associated proteins [BR:
csat03036
]
Eukaryotic type
Gene silencing
piRNA pathway
104788412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
104788412
NCBI-ProteinID:
XP_010512458
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All DBs
Position
5:33616451..33619567
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AA seq
502 aa
AA seq
DB search
MNNNNRGRYPPGVGTGRGAPPNPDYHHQSYRQQQQPQDHQQQQYVQRGYPQNPQQMQLQH
QQQQQHQQQQWSRRPQIPGNANNANEVQKTSQSEATSEPNGQDWKATLRLPPPDTRYQTA
DVTATKGNEFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTG
AFCIPVLEKIDPNNNIIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDI
MRLHQPVHLLVGTPGRILDLTKKGVCVLKDCGMLVMDEADKLLSAEFQPSLEELIQFLPQ
NRQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQLTLVGVTQYYAFVEERQKVHCLNTLF
SKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLV
CTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQT
EQELGTEIKPIPSNIDQAIYCQ
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgaataataataacagaggaaggtatccaccgggtgttggaaccggacgtggtgcgccg
ccgaatccagattatcatcatcagtcgtatcgtcagcaacagcagcctcaagatcatcag
cagcagcagtatgttcagcgcggctatccgcagaaccctcagcagatgcaactccagcat
caacaacaacagcagcaccagcagcaacagtggtcaagacgccctcagattcctggaaac
gccaataacgctaatgaggttcagaagacgtctcagtccgaagctaccagcgaacctaat
ggccaagattggaaggcaacgttaaggctcccacctcctgacacacgttatcagactgcg
gatgtgacagctactaaaggaaatgaattcgaagattactttctgaaaagagatctgtta
aagggaatatatgagaagggttttgagaagccatctccaattcaagaagagagcattcca
attgctttaactggtagtgatatacttgctagagccaaaaacggcacaggaaagactggt
gccttctgcattccagtcctcgagaaaattgatccaaataacaatattattcaagccatg
attctagtgccaacgcgagaactggcccttcagacatcacaggtctgcaaagagctttcc
aagtatttgaatatccaggtaatggtcaccactggcggtaccagtctgagagatgatatc
atgcgactacatcaacctgtacatctgttggttggaactcctggaagaatattggatctt
acaaaaaagggtgtgtgtgttttgaaagactgtggaatgcttgtaatggatgaggccgac
aagcttttgtctgcagaattccaaccttcactagaggaattgatacagtttctgccacaa
aatcgtcaatttttgatgttttccgccacatttcctgtcactgtcaaggcttttaaggat
cgccatctccggaagccctatgttatcaatctcatggatcaactcacgcttgtgggtgtc
acacaatattatgcctttgttgaagaaagacagaaggttcactgcctcaacacacttttc
tctaagctgcaaataaatcaatcgataattttttgcaattctgtcaatcgagtggagctg
ttggctaagaaaatcacagaacttggttattcatgcttctacattcatgcaaagatggtt
caagaccatagaaacagagtgttccatgagttccgcaatggtgcttgcaggaatctcgtc
tgcaccgatctgtttactcgtggaatagacattcaagctgtgaatgtagtgatcaacttt
gattttcctaggacttccgagtcgtatctacacagggtgggacgatcaggacggtttgga
caccttggattggctgtgaatttggtaacatacgaggatcgcttcaaaatgtatcagact
gagcaggaacttgggactgaaatcaaaccaattccttctaatatcgatcaagcaatctac
tgtcagtaa
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