Camelina sativa (false flax): 104788545
Help
Entry
104788545 CDS
T05044
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104788545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104788545
03009 Ribosome biogenesis [BR:
csat03009
]
104788545
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104788545
Spliceosome [BR:
csat03041
]
Complex A
U2 snRNP components
U2 related factors
104788545
Complex B
104788545
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
104788545
Ribosome biogenesis [BR:
csat03009
]
Eukaryotic type
90S particles
Helicases
104788545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
ABC_tran
AAA_19
ResIII
nSTAND3
SRP54
T2SSE
AAA_7
AAA_30
Flavi_DEAD
PhoH
AAA_29
Motif
Other DBs
NCBI-GeneID:
104788545
NCBI-ProteinID:
XP_010512619
LinkDB
All DBs
Position
5:complement(34264792..34268268)
Genome browser
AA seq
725 aa
AA seq
DB search
MGTERKRKISLFDVMDDPSAASKNTKINGLPESGISSLVNKWNGKPYSQRYYDILEKRKT
LPVWLQKEEFLKTLNSNQTLILVGETGSGKTTQIPQFVIDAVDAETSDKRRKWLVGCTQP
RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSPRTVLKYLTDGMLLREAMADPLLER
YKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQEYFSGAPLMKVP
GRLHPVEIFYTQEPERDYLDSAIRTVVQIHTCEPPGDILVFLTGEEEIEDACRKINKDVG
NLGDQVGPVKVVPLYSTLPPVMQQKIFDPAPEPVTEGGPPGRKIVVSTNIAETSLTIDGI
VYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNND
LQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEG
NLTKTGEIMSEFPLDPQMAKMLIVSPEFNCSNEILSVSAMLSVPNCFIRPREAQKAADEA
KARFGHIDGDHLTLLNVYHAYKQNNEDPNWCYENFINNRAMKSADNVRQQLVRIMSRFNL
KMCSTDFNSRDYYINIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEW
VIYNEYVLTTRNFIRTVTDIRGEWLVDVARDYYDLSNFPNCEAKRVLEKLYKKREREKDE
SKNRK
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgggtacagagagaaagaggaaaattagtttgttcgacgttatggacgatccatcggct
gcgtcaaagaacaccaaaatcaatggtcttcccgagtccggaatcagcagtcttgtcaat
aagtggaacggtaagccttattcccagaggtattacgacattcttgagaaacggaagact
ttacctgtctggcttcagaaagaagagttcctcaaaactctcaacagcaatcaaaccctt
attcttgtcggtgagaccggtagtggtaaaactactcagatcccacagtttgttatagat
gctgtggatgctgaaacttctgataagcgtaggaagtggttggttggatgtacacagcct
cgtagagttgcagccatgtctgtgtctcgtcgtgttgctgaagagatggatgttactatt
ggggaagaagttggttacagcatccgttttgaggactgcagtagccccagaactgttctg
aagtacttgactgatggtatgctcctgagagaagcaatggcggatccgctcctagagagg
tacaaagtgattattctcgatgaagcccacgagagaactctagccacagatgtgctgttt
ggtcttctgaaagaagtgttgaaaaatagacctgatcttaagttagttgtgatgagtgct
actctagaagctgaaaagtttcaggagtattttagcggtgctcctctgatgaaagttcct
ggtaggcttcatccagttgagatcttctacactcaggagcctgaaagggactatcttgat
tctgcgattaggactgttgtccagatccacacgtgtgagccacctggtgatattcttgtt
ttcttaactggggaggaggagattgaagatgcttgccgcaaaatcaataaagacgttggc
aatcttggggatcaggttggacctgttaaagttgtgccactgtattctactcttccacct
gtcatgcagcagaagatttttgatcctgctccagagccggtaactgaaggtggtcctcct
gggaggaagattgttgtctccactaacattgctgagacttccctaaccattgatgggatt
gtctacgtcattgaccctggttttgctaagcaaaaagtttacaacccaagaatccgtgta
gagtcgttgttggtatccccgatttcaaaggcaagtgctcaccagagatctggtcgtgct
ggtagaacacggcctggaaaatgcttcaggctttatacagagaagagtttcaataatgac
ttgcaaccgcagacctatccagaaatattgagatcaaaccttgcaaacacagttctgacc
ttgaaaaaactgggtattgatgacttggtgcacttcgattttatggatccccctgctcct
gaaacgctgatgcgagccttggaagttttgaattacttgggagcactggacgatgaaggt
aacttgacaaagacaggtgagataatgagtgagttcccattggatccacagatggcaaag
atgctcatagtcagtcctgaattcaattgctcgaacgagattctctcagtttcagccatg
ctatcagtaccgaattgctttattcggcctagagaggctcaaaaagcagcagatgaagct
aaagctaggtttggacacattgatggagatcacctcacattgttgaacgtctaccacgct
tataagcaaaacaatgaagatccaaattggtgctatgaaaacttcatcaacaatagagcg
atgaaatcagcagacaatgttagacagcagctagtccggataatgtcaaggttcaacctg
aagatgtgcagcactgattttaacagccgtgactactacatcaacataaggaaggccatg
ctatctggttatttcatgcaagtggctcacttagaacgcacagggcattacttgacagtc
aaagacaaccaagtggttcatttgcatccatcaaattgcttggatcacaaacctgagtgg
gtaatctacaacgaatatgttttgaccacccggaatttcatcagaactgtgacagatatt
cgcggtgaatggctagtagatgttgctcgtgattactacgatctttcaaactttcccaac
tgcgaagccaaacgtgtcctcgagaagctttataagaagagagaaagggagaaggatgag
agcaagaacaggaagtga
DBGET
integrated database retrieval system
