Camelina sativa (false flax): 104790424
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Entry
104790424 CDS
T05044
Name
(RefSeq) zinc finger CCCH domain-containing protein 41-like
KO
K13192
RNA-binding protein 26
Organism
csat
Camelina sativa (false flax)
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
csat01009
]
104790424
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104790424
03041 Spliceosome [BR:
csat03041
]
104790424
Protein phosphatases and associated proteins [BR:
csat01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104790424
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
104790424
Spliceosome [BR:
csat03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
104790424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_Nup35
zf_CCCH_4
RRM_PARP14_3
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
104790424
NCBI-ProteinID:
XP_019102205
LinkDB
All DBs
Position
6:complement(4939575..4945976)
Genome browser
AA seq
910 aa
AA seq
DB search
MELSVSSPKQSVLSPPECMSDPEEEHEISEEEDDDRNHKHRRKEEARSQSLEQDSSDQGF
SRPYRKNYRHNENGNSFSEQEKRPFGAGSGQRVQYDNQRMRSNSMFSRDSGPSRGRGNYG
SWAQRDSRFNPVDLSSHMVQVGSMAPNMFGGRGLAGVSAAQSAPWPAFGMIPGVPNGGLD
GFHHLQGSLRPPLNAQLNMGIPRQRCRDFEERGFCLRGDMCPMEHGMNRIVVDDVQSLSQ
FNLPVSVPGAPHLAPSSKPVTAQFGGANFMNAKGAHGRINEVGMTVDGLGYGDAYPSAGG
TDFYDPDQPLWNNSTGETSGAISTLNSHGIDENVAPLDDNNQDGAENGCGIRDSRSTSQS
VWGRMRGSNSQANSKEKTDAVLNSSAGLEDQLKEVSVNISRHGKQNYVGESVTKVVDSSN
TSNDTMNNTRKSTQKALRTLFVNNVPHESNRRDLILAHFQKFGKVIDIHIPLNSERAFVQ
FSKREEAESALRAPDAVMGNRFIKLWWANRDSIPDNGLSTGNGASMKGRGMTASGGQNQL
PIAAALKSNHVNPMAKGPAFHTGGAPSSSEQSKPVVATSGPKVTLLQQKKADTLEQLKET
LKKKQEILEQKRNEYRKKLATLEKQGTVVKGEETDEPDAKRAKLDAASDPGAAIASPKTE
SSTDKRVSTDKRVPIQKPLSACKLSTETPSPDSKNLKQRPYSYTTSLKAPMANRYKLDNR
TTTIKVVPPLPTGLADVAVLKEHFSSYGEVSKVELEENVSIGSGKDHETENENRAACVTF
VKRSAAEKALANAKCWQEHMLQLVWVTRQSSRESNNNSNNNSNSLSVSRDHLISKSKCAS
NDPKPADEVKTSSTEKLENTNVSEDNDSTLDKQETKESDNDNNKSNHESVEGASEAITGT
DEDQSEQIRE
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggaactttctgtttcctccccaaagcaaagtgtgttatctccacctgagtgtatgagt
gatccagaggaggagcatgaaatcagcgaggaggaggatgacgatcgcaaccataagcac
cgaaggaaagaagaggcgaggtctcagtccttggaacaagattcttcagatcaggggttc
tcacggccatacaggaaaaattatagacataatgaaaatgggaattcgtttagtgaacaa
gaaaagcggccttttggggcaggatcagggcaacgtgtacagtatgataatcaaagaatg
aggtcgaactcaatgttttcaagggactctggtcctagtagaggtagaggaaactatggt
tcttgggcccagcgtgattccaggtttaatcctgttgatctctcatctcatatggttcaa
gtcgggtctatggcccccaatatgtttggaggaaggggactagctggtgtttcagctgct
cagagtgcaccatggcctgcttttggaatgattcctggagttccaaatggtggcttggat
ggtttccatcacttacaaggttccctaagacctcccctaaatgctcaactcaacatgggt
attcctcgacagcgatgcagagactttgaggaacgtggtttctgcctcagaggggacatg
tgtccaatggagcatgggatgaatcgtattgttgttgacgatgttcagagtctatcacag
tttaaccttcctgtttcagtccctggtgcacctcatctggcaccttcttctaaaccggtg
actgcacaatttgggggtgctaattttatgaatgctaaaggagctcatgggaggattaac
gaggttggaatgactgttgatggtttgggttatggggatgcatatcctagtgcgggtgga
actgatttttatgatcctgatcaaccgttgtggaataacagtactggtgaaacgtcaggt
gcaatatctactctaaattctcatgggattgatgagaatgtagctccactggatgacaat
aaccaagatggcgctgaaaatggatgtggtattcgagattctagaagcacaagtcaatca
gtttggggaagaatgcgtggttctaatagtcaagcaaattcgaaagagaaaacagatgca
gtattaaattcatctgctggtcttgaagatcaattaaaggaggtctcagttaatatatcc
cgacatggtaaacaaaattatgttggtgaaagtgtcacaaaagttgttgattcatcaaat
acttcaaatgatacaatgaacaatacaaggaaatcaactcaaaaggcattgcggactcta
tttgtgaataatgttccccacgagagtaacagaagggacctcattcttgcccattttcag
aagtttgggaaagttattgatattcacatcccattaaatagtgagcgagcatttgtgcaa
ttctcgaaacgtgaagaagctgaatctgctctcagggctcctgatgctgtgatgggtaac
cgctttattaaactttggtgggcaaatagagatagtatacctgataatggcctgtcaact
ggcaatggtgcttctatgaagggtcgtggtatgactgcttctggagggcagaaccaactt
ccgattgctgcagctttgaaaagcaaccatgtaaatcccatggcaaagggtcctgccttt
cacactggtggagccccatcctcctctgaacagtctaagcccgtggtggctactagtggt
cccaaggttacgctgcttcagcagaagaaagcagacactcttgagcagttgaaggagaca
cttaagaaaaaacaggaaattttggagcagaagcgtaacgagtaccgcaaaaagttggcg
acacttgaaaaacaaggtacggttgtcaagggcgaggaaacagatgagccagatgctaag
cgcgctaaattagacgcagcctctgatcccggtgctgcaattgcatcaccaaaaacagag
tcatcaacagataagagagtgtcaacagataagagagtgcctatccagaaacctctttcc
gcttgcaagctaagcacagaaacaccatctcctgattcaaaaaacctgaagcagagacct
tattcgtataccacaagtttgaaagctcctatggcaaataggtataagttggataaccgc
accacgaccatcaaagtggttcctcctttgccaactgggttagctgatgttgctgtctta
aaggaacatttttcttcttatggcgaagtctcaaaagtggaactggaagagaatgtgtcc
attggtagtggcaaggaccatgaaacagagaacgaaaaccgtgcagcttgtgtcacattt
gtgaaacgcagcgcagccgagaaagcattagctaatgcaaagtgttggcaagaacacatg
ttgcagcttgtgtgggtaacacgtcaaagcagcagagagagcaataataacagcaacaac
aatagtaatagtctctctgtttctcgtgaccaccttatcagcaaaagcaagtgcgcttct
aatgacccaaaaccagcagatgaagtcaagacctcctctacagaaaaactagagaataca
aatgtttctgaagacaacgacagtactttggataaacaagagaccaaagaaagcgacaac
gataacaataaaagtaaccacgagtccgtcgaaggagcttctgaggcaattacaggaact
gatgaagatcagtctgaacaaatccgtgagtga
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