Camelina sativa (false flax): 104790920
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Entry
104790920 CDS
T05044
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104790920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104790920
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104790920
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104790920
mRNA degradation factors
3'-5' decay
Ski complex
104790920
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
104790920
NCBI-ProteinID:
XP_010515019
UniProt:
A0ABM0ZFH5
LinkDB
All DBs
Position
6:complement(11436702..11443875)
Genome browser
AA seq
1345 aa
AA seq
DB search
MSRVQAGNELAFRVGFSGHGGHLRVEPLYTAERDDAVNSLPDFVSPPAFAKETKESIKKH
IEEKYLLPRLEPDQFSAEKAENQWDFDWFSRVKVPLQPSLPRSVVVPTWELPFRRQKEDT
ENRAWEPKSVEVDLSEQMYGDQDSGFFPRMVGPPKDFLRGSVNNRPFRPGGLEDSQSSER
VLPEGVSSGQWVQELLNGGPVQTVPPSFKQSLDLGDLMPYPQTWSVYEDRSSHSNASDVK
SSTLSIQFDDLLKKAWEEDAFSELERDDHTAESESLKAEAEPEAKARKSNDANKGIEADA
TVLDEILSSAKTAILTEEAINSNKQLRKEGWATKGDSQDIADRFYELVPDMAIEFPFELD
NFQKEAICCLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRD
FCEKFDVGLLTGDVSIRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVER
GVVWEEVIIMLPRHINFVLLSATVPNTFEFADWIGRTKQKEIRVTGTTKRPVPLEHCLFY
SGELYKVCENEVFLPKGIKDAKDSQKKKNSNAVSVAPKQHTGSSAHQDGNKSQKHEAHSR
GKQNKHSSAKDLGKSSYSGNSQNNGAFRRSAASNWLLLINKLSKKSLLPVVVFCFSKNYC
DRCADALTGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVLRVQSLLHRGIGVHHAGL
LPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDALRKFDGKEFRQLLPGEYTQ
MAGRAGRRGLDKTGTVVVMCRDEVPDESDLRRIIVGSATRLESQFRLTYIMILHLLRVEE
LKVEDMLKRSFAEFHAQKKLPEKQQLLMLKRALPVKNIECIKCEPEIEDYYDLYMEANEC
NSKMSEAVMQSPNAQNFLVQGRVVVMKSETGIDNLLGVVLKGPSNTNRQYIILVIKSEIP
PPEKNMVSIGKKSSDPSQGYFIAPKSKRGFEEEFYTKPSSRKGSVVIKIELPYHGVAAGV
GYEVKGFDNKDFLCICDSKIKIDQFRLLEDGNKAAFSQTVQQLLDLKSNGNKYPPALDPI
KDLKLKDAELVETYYKWTSLLQKMSANKCHGCVKLEEHMKLAREIKKHKKDLKDLEFQMS
DEALLQMPAFQGRIDVLKEIGCIDEDLVVQIKGRVACEMNSGEELICTVCLFENQFEELE
PEEAVAVMSAFVFQQKNTSAPSLTPKLAKAKQRLYDTAIRLGELQAQYNLQIDPEEYAQE
NLKFGLVEVVYEWAKGTPFAEICELTDVPEGLIVRTIVRLDETCREFKNAAAIMGNSALH
KKMDLASNAIKRDIVFAASLYVTGV
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atgagcagagtccaagcaggcaacgaactcgccttccgtgtcggcttctccggtcatggt
ggtcacctccgcgttgagcctctgtacacggcggagagagacgacgccgtgaactcactt
cccgatttcgtttcccctcctgcttttgccaaagaaacaaaagaatcaataaagaaacat
atcgaggagaaatatctcctaccaagactggaaccggatcagttttctgccgaaaaagct
gagaatcagtgggattttgattggttttcaagggtgaaggtgccacttcaaccctctttg
ccaaggtccgttgtggttcccacttgggagttgccattcaggcgtcaaaaagaggatact
gagaacagagcatgggagcccaaatcagtagaggtggatttgtcggaacaaatgtatgga
gatcaagattctggattttttccacgaatggttggacctccgaaagattttctgagagga
agtgtcaataatcgccctttccgtccaggtggcttggaggattcacagtcttcagagaga
gtccttccagagggtgtctctagtggccaatgggtacaggaattgctcaatgggggtcct
gttcaaaccgttcctcctagttttaagcagagtttagatcttggagatctgatgccatat
ccccaaacatggagcgtttatgaggatcggagttcacatagcaatgcttcagatgtaaag
tcgagtacgttgtctattcagtttgatgatctgttgaagaaggcatgggaagaagatgct
ttctccgaacttgagagagatgatcatacagctgaatctgagtctctaaaggcagaagct
gaacctgaagctaaagcgaggaaaagcaatgatgccaacaagggaatagaggctgacgcc
actgttctggatgagattttgtcatcagcaaaaacagcaatattgacggaagaggcaatt
aacagtaataaacaactacggaaagagggatgggccactaaaggagatagccaagacatt
gccgaccggttttatgaacttgttcctgacatggcgattgaattccctttcgaattagac
aactttcagaaggaggctatctgttgtttagagaaaggggagtctgtttttgtagctgct
catacatcagcggggaagacagttgttgcagaatatgcattcgctttagccaccaagcat
tgtacacgagctgtttatactgctccaattaaaaccatcagtaaccaaaaatacagagat
ttttgtgagaagtttgacgtaggacttctaacaggcgatgttagcataaggccagaggca
tcttgtctgatcatgactactgaaatattaaggtcaatgctttatcgtggtgccgatatc
atacgtgatatagaatgggttatatttgatgaagttcactatgtcaatgacgtagagaga
ggggttgtttgggaagaagttatcatcatgttgccaaggcatataaattttgtcctcctt
tctgcaacggtgccaaatacatttgaatttgctgattggattggccgaacaaaacaaaaa
gagatacgtgttactggcacgacaaaaagaccagttcccctagagcactgcctattttat
tctggagaactctacaaagtttgtgagaatgaagtttttcttcctaaagggataaaggat
gctaaagattcacaaaagaagaagaattcaaatgcagttagtgtcgctcctaaacagcat
acaggatcttcagctcatcaagatgggaacaaatctcagaaacatgaagctcattctcgt
ggcaagcagaataaacactcaagtgcaaaagatttgggaaaatcctcttatagtggtaac
agtcagaacaatggggcttttagacgatcagcagcttcaaattggttactgcttatcaac
aagctctcaaaaaagtccctattacctgtggttgtcttctgtttctcgaagaattattgt
gatagatgtgctgacgctttgactgggactgacctcactagtagttctgagaaaagtgaa
atccgtgtcttttgcgataaagctttttcaagactgaaagggtctgatagaaatttacct
caggtcctcagagtccaaagcttacttcatagaggaataggtgttcatcatgctgggctg
cttccaatagtaaaggaagttgttgaaatgcttttttgccgtggtgttattaaggtgcta
ttttcaacggagacatttgccatgggggttaacgctccagccagaacggtcgtttttgat
gctttgagaaagtttgatggcaaggaatttagacaattgcttcctggagagtacactcaa
atggcagggcgtgctggcagaagaggacttgacaaaactggcacagttgttgtcatgtgt
cgcgatgaagttccagatgagagtgatctgaggcgtataattgttggaagcgcaacaaga
ctagaatctcagttccgactaacctacataatgatcctccatcttttacgtgttgaagaa
ttgaaggtggaggacatgctgaaaagaagttttgctgaattccatgcccagaagaaattg
cccgagaaacagcagcttctcatgctaaaacgtgctctaccagtcaaaaatatcgaatgt
attaaatgtgaaccggaaattgaagattactatgacttgtatatggaagcaaacgagtgt
aacagcaagatgtcagaagcagtcatgcagtctcctaatgcccagaactttcttgtacaa
ggaagagtagtggtcatgaaatctgaaacaggcatagacaatttactcggagtcgttctg
aagggaccttccaacactaacagacaatatattattttggtaataaaatctgaaataccg
ccaccagagaaaaatatggtcagcattggcaagaaaagctcagatccctctcaaggttat
tttattgcgcccaagtcaaaacgtggttttgaagaagaattttatacgaaaccgagctct
cgtaaaggttccgttgtgatcaagatagagctcccgtaccatggagtcgctgctggtgta
ggttacgaggttaaagggtttgataacaaagatttcttgtgcatatgcgatagcaagata
aagattgatcagtttcgtctactcgaggatgggaacaaggcagctttttctcagacggtt
caacaacttttggatctgaaatcaaatggaaacaagtatcctcctgctctagacccaata
aaagatttgaagctgaaagatgctgagcttgtggagacgtactataaatggaccagcctg
ttgcaaaagatgtcagcgaataagtgccacggttgtgttaaactggaagagcacatgaag
ttagctagggagattaagaagcataagaaggatctcaaagatctagaatttcaaatgtct
gatgaagccctattacagatgcctgcgtttcagggccggatcgatgttctgaaggaaatt
gggtgtatagatgaagacctcgtcgttcaaatcaaaggccgtgtcgcttgcgagatgaat
tctggggaagaattgatatgcacagtgtgtctgtttgagaatcaattcgaagaattagaa
ccagaagaagcagtggctgtaatgtctgcctttgtcttccaacaaaaaaacacttcagcg
ccttcacttactcctaagctagctaaagctaaacaaagactctatgataccgcaatcaga
cttggtgaacttcaagctcaatacaacttacaaatagaccctgaagaatatgcccaggag
aatctcaaatttggtctggttgaagttgtctatgagtgggcaaaggggactccatttgca
gagatatgtgaactgactgatgtccctgaaggcctgatagttcgtaccattgtgagattg
gacgagacatgccgtgagttcaagaacgctgccgccattatggggaactcggcattacac
aagaaaatggatttggcttcaaatgctataaaacgtgacattgtctttgcggctagtctg
tatgtgactggagtgtaa
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