Camelina sativa (false flax): 104791102
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Entry
104791102 CDS
T05044
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104791102
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104791102
03009 Ribosome biogenesis [BR:
csat03009
]
104791102
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104791102
Spliceosome [BR:
csat03041
]
Complex A
U2 snRNP components
U2 related factors
104791102
Complex B
104791102
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
104791102
Ribosome biogenesis [BR:
csat03009
]
Eukaryotic type
90S particles
Helicases
104791102
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
ABC_tran
T2SSE
PhoH
TsaE
AAA_7
AAA_16
FtsK_SpoIIIE
ResIII
ATPase
AAA_29
Cas3-like_C_2
AAA_30
TrwB_AAD_bind
ORC-CDC6-like
SRP54
Motif
Other DBs
NCBI-GeneID:
104791102
NCBI-ProteinID:
XP_010515204
LinkDB
All DBs
Position
6:12740641..12742054
Genome browser
AA seq
438 aa
AA seq
DB search
MVNSARYLEIQEERRNLPVWVHKDEFLQALKENQMVILVGDTGSGKTTQIPQFVLEALVN
ENPNPGGTGRLVVGCTQPCRVAAMSAARRVAEEMDAVIGEEVGCTVRFDDCSSSRTVLKY
LTDGMLLREALVDPLLSNYKAIILDEAHERSIATDLLFGILVKALTSRPTLKLVVMSSTL
YAHKLRYYFGGHVPLIKVPGRLHPVEIIYTQEPVTHYLEAAIRKVIQIHMCEPPGDVLVF
LTGEEEIEDACSRILHKLGDQVKVVPLYSFLPPAMQQRAFDPTPHPVRKIVVSTNIAETS
LSIDGIVYVVDPGFSMQKYYNPKTRLDSLVVSPISMASADQRARRAGTTGPGKCFRLYTQ
EIYSGLIPLEVPEMYRANLVNTVLALKRLGVKDLLSLNFMDPPFPKTLFQALTDLFDLGA
VDDEGNLTKIGEMMSLEV
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggtgaactctgcgaggtatttggaaatacaggaggaacgtaggaacctaccagtatgg
gtacacaaagacgagtttctccaagctctgaaggaaaatcagatggtgatactggtgggt
gatacgggcagtggtaagacaacgcaaatcccacagttcgttttagaagctttggtcaat
gaaaaccctaatcctggtgggactgggaggttggttgttgggtgcacgcagccttgtaga
gttgcagcgatgtctgcggcccgccgagttgctgaagagatggatgcagtgatcggtgaa
gaagtcggttgcacagtccgtttcgacgattgcagcagctccagaaccgtgctcaagtac
ctgaccgatggaatgcttctgagagaagcactggtggatccgctcttatcaaattacaaa
gcgatcattctggacgaggcccacgaaagaagtatagccacggatttgctttttggtatt
cttgtaaaagccttgactagccggcctactcttaagctggttgtgatgagttcaacccta
tacgcccacaagctccgctactattttggcggtcatgtgcctctcatcaaagtcccaggt
aggctccatccagtggagatcatttatactcaagagcctgtgactcactatctcgaggct
gctatacgcaaagttatccagattcacatgtgtgagccacctggtgatgttcttgttttc
ctaaccggggaagaagagattgaagatgcttgcagcaggatcttacataagctcggagat
caagtcaaagtcgtgccactgtattccttcctcccgcctgccatgcaacagagggctttc
gatcccacaccacatcccgtgagaaagattgtcgtctccacaaacattgcagagacttct
ctatccatcgacgggattgtttacgtcgttgatcctggtttctccatgcagaaatactac
aacccaaaaactcgtctagactccttggtggtgtccccaatatccatggcaagtgctgac
cagagggcacgtcgtgccggtacaacagggcctggtaaatgtttcaggctatacacacag
gaaatttacagtggcttaataccgctggaggttcccgagatgtatagagcaaacctcgta
aacacagttctggccttgaaaaggctgggtgtgaaggacttgttatccttgaactttatg
gatcctcctttccctaagaccctttttcaggccttgacggatttgtttgacctgggagca
gtggacgatgaaggtaacttgacaaagataggcgagatgatgagtctggaggtctaa
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