Camelina sativa (false flax): 104791133
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Entry
104791133 CDS
T05044
Name
(RefSeq) protein RRP6-like 1 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104791133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104791133
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
104791133
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
DUF5734
Motif
Other DBs
NCBI-GeneID:
104791133
NCBI-ProteinID:
XP_010515250
UniProt:
A0ABM0ZG56
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Position
1:complement(14955504..14959979)
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AA seq
535 aa
AA seq
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MEEDSVASWKHHGKAKVSFHVATINKPQEEFKILVDNANKPFDHVFLERSEDGLRFIHPL
EKLSVVDFVDQNLIERKPVKPLPLEETPFKIVEDVKDLKELAATLQSVEEFAVDLEHNQY
RSFQGLTCLMQISTRTEDYIVDTFKLWDHIGPYLRELFKDPKKKKVMHGADRDIIWLQRD
FGIYVCNLFDTGQASRVLKLERKSLEFLLKHYCGVAANKEYQNADWRIRPLPDVMTRYAR
EDTHYLLYIYDVMQIDLHIMAKENEQSDSPLIEVYKRSYDVCMQLYEKELLTGDSYLHVH
GVQTGHLNAVQLAIIAGLCEWRDQIARADDESTGYVLPNKTLIDIAKDMPINVGQLRRLL
KSKHPYIERNFDAVISVIRRAMQNAAAFEPVVQSLKDWRPGTVEKNIKPMIEKPGTEFTA
YTKKRKFESELSNKLQAKEVVKVSKSKPDNVIVLDDYDDTDEQSWERGDASNRALEMPSK
GSMTQVPHTSSTEIVVIEDDDESENDSESREDEDMIRRSEKHRRFMSLKRGFLNI
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagattcagttgctagttggaaacatcatggcaaggccaaggtttctttccat
gtggcaacgataaacaagcctcaagaggagtttaagattttggtggacaatgctaataaa
cctttcgaccatgttttcttggagaggagtgaggacggtcttcgcttcattcatcctttg
gagaaactttcggtggtggactttgtggatcaaaatcttatagagaggaaacctgttaag
cctctcccattggaagagactccttttaagattgttgaagatgtcaaagatctcaaggaa
ttagctgccacattgcaaagtgttgaagagtttgctgttgatctggagcataatcagtat
agatcttttcaaggattaacatgtttgatgcaaatctccaccagaaccgaggattatatt
gttgatacattcaagctttgggatcacattggtccttatctaagggaactcttcaaagac
cctaaaaagaaaaaggttatgcatggagcagatcgtgatattatttggcttcaacgggac
ttcggcatttatgtctgcaatctttttgacacaggacaggcctcaagggtgctaaagctg
gagagaaagagtctcgaatttcttctgaagcattattgtggagttgctgcaaacaaagaa
taccaaaatgcagactggagaatacgaccccttccggatgtaatgacaagatatgctaga
gaagatacccattatcttttgtacatttatgacgtaatgcaaatagatttgcacataatg
gcaaaggaaaacgagcaatctgactctcctctaatagaggtttacaaacgcagttacgat
gtgtgcatgcaactatatgagaaagagcttttgactggggattcatatcttcacgttcat
ggggttcagacaggtcatctcaatgcagttcaacttgccattattgcggggctttgtgaa
tggcgagatcagattgcacgtgcagacgatgagagcaccggttatgtattgccaaacaaa
acacttattgatatagccaaggatatgccaattaatgttggccagttgcgccggttgttg
aagtctaagcatccttacatcgagcgtaattttgacgctgtgatcagtgtcatcagacga
gcaatgcaaaatgcagcggcattcgagccagttgttcaatctttaaaagattggcgtcct
ggaacagttgagaaaaatatcaaacctatgattgagaaaccgggcacagagttcacagct
tatacgaagaaacggaagtttgaaagtgaactttcaaacaagttgcaggcaaaggaagtt
gttaaagtgtccaagtcgaagccagataatgtcatagtgctggatgattatgatgatact
gatgaacagagctgggaaagaggggatgcttccaatagggctttggaaatgccttctaag
ggatcgatgactcaagtgccacatacaagtagtacggaaattgtggttatagaagatgat
gatgagtcagagaatgactcagaaagtagagaagatgaagatatgattaggagaagtgag
aagcataggagattcatgagtctaaaacgcggctttcttaacatttag
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