Camelina sativa (false flax): 104792062
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Entry
104792062 CDS
T05044
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
104792062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104792062
Enzymes [BR:
csat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
104792062
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
104792062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
PGA2
Motif
Other DBs
NCBI-GeneID:
104792062
NCBI-ProteinID:
XP_010516389
LinkDB
All DBs
Position
6:17981419..17991729
Genome browser
AA seq
1662 aa
AA seq
DB search
MAQAQTTEGASQVVESVRFSFMTERDVRKHSFLKVTSPVLLDNVERPVRGGLYDPIMGPL
NDKEACESCGQLKLCCPGHCGHIELVYPIYHPLLFSLLYNFLQRTCFFCHHFMAKANDVK
KCVSQLKLIMKGDVVSAKQVEVKSDSTSTESENSDVSCDSGLTNDSSQECEDSDMEDQRW
TSLQFAEVTAVMKNFMKLSSKECDKCKAKNPKLEKPMFGWIRMKGMKASAVGANVIRGLK
VKKSTSRVENPDDCDDSGIDALSEAEDSGKENREKSTEIAKEFEQHKDDSKRDLLPSEVR
EILKDLWENEHEYCSFIGDLWQSGSEKVNYSMFFLESVLVPPIKFRPPTKGGDSVMEHPQ
TVGLNKVLLSNITLGNACTNKLDHSKVISRWMNLQESVNVLFDSKTASVQSQKDGSGICQ
LLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPLCFALKLIFPERVTIYNVEM
LMVAIINGPDVHPGATHFSDKLSTVKLPSDKKERIAIARKLGSSRGATTELGKTCDINFE
GKVVYRHIRDGDVVLVNRQPTLHKPSLMAHIVRVLKGEKTLRLHYANCSTYNADFDGDEM
NVHFPQDEISRAEAYNIVNANNQYTRPSNGDPLRALIQDHIVSSVLLTKRDTFLDKDQFN
QLLFSSGVTDMALSSFSEKSGKKVVVSASDAELLTITPAILKPVPLWTGKQVITAVLNQI
TKGHPPFTVEKATKLPVDFFKCRSKEVKPNSGDLTKKKDIESWKQDLNEDKLLIRKNEFV
CGVIDKAQFADYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQIHGFTCGVDDLIILKDM
DEERTKQLQECEKVGERVLRKTFGIDVDVQIDPLDMRSKIERILYEDGESALASLDRSIV
NDLNQCSSKGVMNDLLSDGLLKTPGKNCISLMTISGAKGSKVNFQQISSHLGQQDLEGKR
VPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRS
GYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVDVHRSSFIGKFKELTVNQDMV
LQRCSEDMLSGSSSYISDLPISLKKDAEKFVEAMPMNEHIDSKFVRQEELLKLVKSKFFA
SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAANIKTP
IMTCPLLKGKTKEDASHITDKLRKITVADIIKSMELSIVPYAVHENEVCSIHKLKINLYK
PEHYPKHTDITEEDWEETMTAVFLRKLEDAIDIHMKMLHRIRGIRDFVEDTSPTAGNETD
NDDSVSGKQTEDDDDDGEGTEVDDLGSDAQKRKKQAIDEMDYEENSDNETNEPSSISGVE
DPEMDSEDEDAEVSKEGTPEPQEETLEPQKKVKPVKKVKEQSKKKRRKFVKAKGDRNILV
KSKGKKFEVHFRFRAGEPHILLAQIAQKTAQKVYIQNSGKIERCTVANCGDPQVIYHGDN
PKERIEISNDEKKASPALHASGVDFPALWEFQDKLDVRYLYSNSIHDMLNIFGVEAARET
IIREINHVFKSYGISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATK
FIVQAATYGEKDTLETPSARICLGLPALSGTGCFDLMQRVEL
NT seq
4989 nt
NT seq
+upstream
nt +downstream
nt
atggctcaagctcaaaccacagagggagcatcccaggtggtggaatctgttagattcagt
tttatgacagagagagatgttcggaagcatagtttcctgaaagttacgagtcctgtatta
ctcgataacgttgagaggcctgttcgtggtggtctctatgatcctatcatgggtccttta
aatgataaagaagcttgtgaatcatgtggtcaactcaagctttgttgtccaggacattgt
ggtcatatcgagcttgtctatcctatttaccatcctttgctcttcagtcttctttacaat
tttttgcagaggacctgtttcttctgtcatcactttatggcaaaagcgaatgacgttaag
aaatgtgtttctcagctgaaacttattatgaagggtgatgtagtttccgcgaagcaagtg
gaggttaaaagtgacagcacttctactgagtcagagaatagtgacgtaagctgtgattca
ggtttaaccaatgattcatcccaagaatgtgaagattctgatatggaagaccagagatgg
acatctcttcagtttgctgaagtcactgctgtcatgaagaattttatgaagttgtcatca
aaggagtgtgataaatgcaaagcaaaaaatcctaaactggagaaacctatgttcggatgg
attcgcatgaaaggtatgaaagcgtccgcagttggagctaatgtgattcgagggcttaag
gtaaagaagtccacaagccgtgttgaaaatcctgatgactgtgatgatagtggtatcgat
gcattatcagaagctgaagatagtggtaaagagaacagagaaaagtctacggaaatagct
aaagagtttgaacagcataaggatgattctaaaagagaccttttgccgagtgaggtgagg
gaaatcttaaaagatctgtgggaaaatgagcatgagtactgctccttcattggtgatctt
tggcagagtggatctgaaaaagttaactactccatgttctttttagagagtgttcttgtg
cctcctattaaatttagacctccaacaaaaggaggtgatagtgttatggaacatcctcaa
accgtaggactgaataaggtcttactatcgaacataacactcgggaatgcctgtactaac
aaattagatcattctaaagtaatttccagatggatgaatcttcaagaatcagtcaatgtc
ttgtttgatagtaaaactgcctcagttcaaagccagaaagacggctctggaatatgccaa
ttgttggagaaaaaagagggtctatttcggcaaaaaatgatgggaaagagagtgaatcat
gcatgcagatctgttatatctccagatccttatatcgctgtcaatgacatcgggattcct
ctttgttttgctttgaaattgatatttcccgagagggtgactatttataatgttgaaatg
ttaatggttgctatcattaatggtcctgacgttcatcctggagctacccatttctcggac
aaattatctacagtgaagttgccttcggacaaaaaagaacgaattgcaattgcaagaaaa
ttaggctcctcacgaggagcgactacagaacttgggaaaacttgtgatatcaactttgaa
ggtaaagtagtctatcgacatatacgagatggtgacgtcgtccttgtgaatcgtcagcca
acattacataaacctagcttaatggcgcacattgtccgtgttctgaagggggagaaaaca
cttcgtctccactatgcaaattgcagtacatacaatgcagattttgatggtgatgagatg
aatgtgcattttccacaagatgagatttcacgtgctgaggcctacaatattgtcaatgct
aacaaccaatatactaggccgtcaaatggcgatccacttcgagctttaattcaggatcat
attgtcagttccgttttacttactaagagggacacatttttggacaaagatcaatttaat
cagcttctcttcagttccggtgtaactgacatggcactcagttctttttctgaaaaatct
ggcaagaaagtcgtggtatcagcttctgacgcagaattgttgacaattacgccggctatt
ttgaaaccagtgcctctttggaccgggaagcaggttatcactgcagtgttgaatcagata
accaaaggtcacccgccattcaccgtagagaaagctaccaaacttccagttgatttcttt
aaatgtagatcgaaagaagtaaaacctaatagtggagatttgaccaaaaagaaagacatt
gagtcatggaaacaggatcttaatgaagataaactgctcatcagaaaaaatgaatttgtc
tgcggtgtgattgacaaggcgcagtttgctgactatgggttggttcatacagtgcatgag
ctttatggttcaaatgctgctggaaatttgctttccgtttttagtcgtctatttacggtc
tttcttcagattcacggtttcacttgtggagttgatgatctcattattttaaaagatatg
gatgaagagaggacaaagcaacttcaagaatgtgaaaaagttggtgaaagagtactccgg
aagacctttggcatagatgttgatgttcagatagatcctctggacatgagatccaaaatt
gaacgaattctttatgaggatggggaatctgccttggcatctttggacaggagcatcgta
aatgatctcaaccagtgttcaagcaagggtgtgatgaacgatttgctctctgatgggtta
ctgaaaactcccggaaagaattgtatatcgctaatgacgatatctggggctaagggcagt
aaggttaactttcagcaaatctcttcacaccttggccagcaagatttagaaggaaaaaga
gttccccgaatggtttctgggaagacattgccatgtttccatccatgggactggtcccct
agggctgggggttttattagtgacagatttcttagtggtcttcgcccccaagaatattac
tttcattgcatggctggacgagaagggttagtcgatactgcagtgaagacatcgcgtagt
ggttatctgcaaagatgcttgatgaaaaatcttgagagtcttaaagtcaactatgattgt
actgtccgggatgctgatggatccatcattcagttccaatatggtgaagatggtgtggat
gttcatcggtctagcttcattggaaagttcaaagaactgacagtgaatcaagatatggtc
ctccaaagatgcagtgaagacatgctctctgggtccagtagttacatcagtgatctgcct
attagtcttaagaaggatgctgagaagtttgtcgaggcaatgccaatgaatgaacatatt
gattctaaatttgtgagacaagaagaactactaaagctggtgaagtcaaaattttttgca
agtctggcccagccaggggagcctgtaggtgtacttgctgcccagtctgtaggagagcca
tcaacacagatgacgttgaatactttccatcttgctggacgtggagagatgaatgtgaca
cttggaattccacgtttgcaagagattttgatgactgctgcagcaaacattaagacacca
ataatgacttgccctttgctgaagggcaaaacaaaagaggatgcaagtcatattactgat
aagttgaggaagattaccgtggcagatataataaagagtatggaactttcaattgtacca
tatgcggttcatgagaatgaagtttgtagtattcacaagcttaagataaatctctacaag
ccagagcattatccgaagcacactgatatcactgaagaagattgggaagagacgatgacg
gctgtgtttttgaggaagttggaagatgcgatagatattcacatgaaaatgctccatagg
ataaggggcataagagattttgtggaagacactagtccaacagctgggaatgaaactgat
aatgatgattctgtaagtggaaagcagactgaagatgatgatgatgatggtgagggtaca
gaggttgatgatcttggttcagatgcacagaagcggaagaaacaagcaattgatgagatg
gattatgaggaaaattctgacaatgagacaaacgaaccatcgtcaattagtggagtagaa
gaccctgagatggatagtgaggatgaggacgcagaagttagcaaggaaggtactccggaa
ccacaggaagagactctggaaccccagaaaaaggtaaaaccggtaaagaaagttaaagaa
cagagtaaaaaaaagagacggaaatttgttaaagctaaaggagacagaaatatcttggtg
aaatctaaaggaaaaaaatttgaggtccatttcaggtttcgtgccggcgagcctcatatt
ttacttgcccagattgctcagaaaacagcgcagaaggtttacatccagaattctgggaag
atcgaacgatgcacagtggcgaattgtggtgatcctcaagtgatctaccatggagacaat
ccgaaggagagaatagaaatctcaaatgatgagaagaaagcctcaccagcactccacgca
tcaggagttgatttccctgcactatgggaattccaagataaacttgatgtcaggtacttg
tacagcaacagcattcacgatatgctcaacatttttggagtcgaagcagcaagagaaact
ataatcagagaaataaaccatgtcttcaaatcttacggtatttctgtaagcatcagacac
ttgaacctcattgcggactacatgacattttccggtggataccgaccaatgagccgtatg
ggaggaattgcagaatcaacttcaccattttgcagaatgacatttgaaacagccactaaa
ttcattgtccaagcagctacttatggagaaaaggacacactagaaactccctcagctagg
atctgtcttggcttgcccgcgctttcaggaaccggatgctttgatttgatgcagagagtg
gagctctga
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integrated database retrieval system
