Camelina sativa (false flax): 104792142
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Entry
104792142 CDS
T05044
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 2-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104792142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104792142
Enzymes [BR:
csat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104792142
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104792142
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104792142
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
FTP
PHF5
Motif
Other DBs
NCBI-GeneID:
104792142
NCBI-ProteinID:
XP_010516507
UniProt:
A0ABM0ZJ83
LinkDB
All DBs
Position
6:complement(18412024..18417205)
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AA seq
601 aa
AA seq
DB search
MLSVIRVHLPSEIPIVGCELTPYVLVRRPDKNNATDDIPESSPLEGYFLRYRWYRVQSDK
KVTICSVHPMEQATLQCVFCSKRKALVAKSYHCSPKCFTDAWQHHRTLHERATAENGNEE
DELVRYNSAGSGALAGTLSGSMSNLNIANNGPAPFYPSNVTQKNGGETIEVGGCKTYTPT
ADDIGYVLKFECVVANAETKQSVGHPSTILTSRVIPAPSPSPRKLIPVNGADVMGHLDQD
GRIQSAGSFTVLSYNILSDTSASSDHYSYCPPWALSWPYRRQNLLREIVGYRADVVCLQE
VQSDHFLDIFAPELDKHGYQALYKRKTNEVLSGSTNTIDGCATFFRRDRFSHVKKYDVEF
NKAAQSLTDAMIPQAQKRTALNRLVKDNIALIVVLEAKFGNQPTDPSGKRQLICVANTHV
NVQQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNTLPGSAPHTLLVMGKVDPMHP
DLVVDPLNILRPHTKLTHQLPLVSAYSSLSLVRPGMGLGLEQQRRRMDLNTNEPLFTNCT
RDFIGTHDYIFYTADTLTVESLLELLDEDGLRKDTALPSPEWSSNHIALLAEFRCKPRTR
R
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcgtgatccgagtgcatctaccttctgaaattcccattgtgggctgtgaattg
actccttacgttctcgttcgtcgccccgataagaacaacgccactgacgatatccctgaa
tcctctcctcttgaaggctacttcttgagataccgatggtaccgtgtacagagcgataag
aaagtaactatttgcagtgtgcatccaatggaacaagccactttgcaatgtgttttctgt
tctaagcgtaaagcccttgttgctaaaagctatcactgttcacctaaatgctttaccgat
gcctggcagcatcacaggactttgcacgagcgagctactgctgagaacggaaacgaggaa
gatgagttggtccggtataacagtgcgggttctggtgctcttgccgggaccttatctggg
tccatgtcaaatcttaatattgccaacaatggtccagctccgttttatccttctaatgtt
actcagaaaaatggaggagagacgattgaggtcgggggttgcaaaacgtacactccaaca
gctgatgatattggctacgttttgaagttcgagtgtgttgtggctaatgctgagactaaa
cagtctgtgggacatcctagtaccattttgacttcacgagttattcctgctccttctcca
agtccccgtaagctaatccctgttaacggagctgatgtcatgggtcacttagatcaagat
ggtcggattcagtctgcaggatcattcactgttctttcatataacattttgtctgatact
tctgcaagtagcgaccactacagttactgtcctccttgggctctttcttggccataccgc
agacagaatttgttaagggagattgttgggtatcgagccgatgtagtttgcctgcaagaa
gtacaaagtgaccatttccttgatatttttgctcctgagttggataagcatggctatcaa
gctctctacaagaggaagactaatgaggttctcagcggaagtacaaataccattgacggc
tgtgcaacatttttccgacgggatagattttcgcatgtcaagaaatatgatgttgaattc
aataaggctgctcaatccttgactgatgctatgatccctcaagcgcagaagagaactgca
ttaaaccgattggttaaggataacattgcattgatagttgttcttgaagccaagtttggt
aatcaacctactgatccttctgggaagcgccagcttatttgtgtggcaaacacacatgta
aatgttcaacaagatctgaaggatgtgaaactctggcaggttcatacattattaaaggga
ctggagaaaatagctgctagtgctgatattcccatgcttgtgtgtggagacttcaatacg
cttcccgggagtgctcctcatacacttcttgtaatgggaaaggtcgatccaatgcatcca
gatctggtagtagatccccttaatatcctgcgtccccacactaaattgactcatcaattg
cctctggtgagcgcgtactcatcgctatcgcttgtgagaccgggaatgggtcttggattg
gaacaacaaagaaggagaatggatcttaatacaaacgagcctttgtttaccaattgtaca
agggacttcatcggcactcatgactacatattctacacagcggatacattaacggtggaa
tctctattggaattactggatgaagatggattaagaaaggacacagctcttccttcccca
gaatggtcttctaatcacattgcactcttagctgaatttcgatgcaagcctaggaccaga
cgctaa
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