Camelina sativa (false flax): 104792366
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Entry
104792366 CDS
T05044
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104792366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104792366
03012 Translation factors [BR:
csat03012
]
104792366
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104792366
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104792366
Translation factors [BR:
csat03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104792366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
Rad17
NACHT
ATPase
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
104792366
NCBI-ProteinID:
XP_010516798
LinkDB
All DBs
Position
6:19444080..19450139
Genome browser
AA seq
1040 aa
AA seq
DB search
MQQVASLSSCISTLRFLLPYSSSSKLSPLRPLFHIAAMPPYGPNSQGGRRGGGSSSGRGA
GRRGGGRGGGGGRGGGGGGRGEQRWWDPVWRAERLRQQQVEMEVFDENEWWNKIEQWKTG
GEQEMLIKRNFSRGDQQTLSDMAYQFGLYFHAYNKGKALVVSKVPLPDYRADLDDRHGST
QKEITMSTETERKLGSLLKTTQESGSSSSSTSAVQDQQDRSATLGLKRPDSASKLPDSLE
KEKFSAVLKERQEKLKATESVKALQAFRDKLPAFRMKEGFLNSVLENQVLVVSGETGCGK
TTQLPQFILEEEISSLRGADCNIICTQPRRISAISVASRISAERGEPIGESVGYQIRLES
KRSDQTRLLFCTTGVLLRRLIEDPNLTNVSHLLVDEIHERGMNEDFLLIILRDLLPRRPD
LRLILMSATINADMFSTYFGNAPTMHIPGFTFPVAELFLEDVLEKSRYSIKSSDSGNYQG
NSRGRRRDSESKKDDLTTLFEDIDINVHYKSYSSATRLSLEAWSGAQIDVDLVEATLEHI
CRHEGGGAILVFLTGWDEISKLLEKINGNRLLGDSSKFLILPLHGSMPTVNQREIFDRPP
PNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKVACLLPSWISKASAHQRRG
RAGRVQAGVCYRLYPKVIYDSFPQYQLPEIIRTPLQELCLHIKSLQVGSIGSFLAKALQP
PDALAVENAIELLKTIGALDDIEDLTPLGRHLCTLPVDPNIGKMLLIGAIFQCVNPALTI
AAALAYRSPFVLPLNRKEEADDAKRYFAGDSCSDHIALLKAYEGYRDAKRGGNEKDFCWQ
NFLSPVTLRMMEDMRNQFLDLLSDIGFVDKSRPSAYNQYSQDMEMVSAVLCAGLYPNVVQ
CKRRGKRTAFYTKELGKVDIHPGSVNARVNLFSLPYLVYSEKVKTTSVYIRDSTNISDYA
LLMFGGNLIPSKTGEGIEMLGGYLHFSASKNVLELIQRLRGEVDKLLNKKIEDPSLDITV
EGKGVVSAVVELLRSRNIRY
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgcaacaagtagcgtcgctctcctcttgtatctccacgcttcgcttccttcttccttat
tcttcttcttctaaactctctccgcttcgtcctctcttccatatcgccgccatgcctcct
tacggtcctaattctcaaggtggtcgtcgaggcggaggttcctcctccggtcgcggtgct
ggtcgtcgtggtggtggacgcggtggcggcggcggtcgtggcggtggtggtggcggtcgt
ggggaacagcgatggtgggatccggtgtggagagctgagcgtctgcgccagcaacaagtt
gagatggaagtttttgatgagaatgaatggtggaacaagattgagcaatggaaaacagga
ggagaacaagagatgctaattaagcgtaattttagccggggagatcagcaaacactttct
gatatggcttatcagtttggtctttacttccatgcatacaataaagggaaggctcttgta
gttagcaaagttcctttaccagattatcgggctgatcttgatgatcggcatggatccact
cagaaagagattacaatgtccacagagacggagagaaaacttggaagtcttttgaaaaca
acacaagaatcagggtcttcaagttcctctacttcagctgttcaagatcaacaggaccgt
tcagcaactcttggcttgaaaagacctgattctgcttccaaattgcccgattctcttgag
aaagaaaaattcagtgctgtactcaaggaaaggcaggaaaagcttaaggcaactgagagt
gtaaaagcacttcaagctttcagagacaagctacctgcttttagaatgaaagaggggttt
cttaattctgttttagaaaatcaggtattggtagtttcaggagagaccgggtgtggtaaa
acaacacaacttcctcaatttatattggaggaagaaatatcatccctaagaggtgctgat
tgcaacataatttgtacacaacctcgacgtatttctgccatatcggttgcttcgcgtata
tctgctgaaaggggtgaacccattggtgaatctgtgggttatcagattcgtctagaatca
aagcgttctgatcaaacacgattgctattttgcactactggtgtcttactccggcggctg
attgaggatcctaatctaactaatgtaagccatttgcttgtggatgagattcacgagaga
ggcatgaatgaggatttcctactaatcatactacgtgatctccttcctcgacgcccagat
ttgcgtcttattttgatgagtgctacgataaacgctgacatgttctcaacatatttcggg
aacgctccaacgatgcatatcccgggcttcacattccctgtggcagagttattcctagaa
gatgtgctggagaaaagtcgctatagtattaagtcgtctgattcagggaattatcaaggc
aattcgagaggtaggagaagagactcagaatctaagaaagatgacctgactactctgttt
gaggatattgatatcaatgttcactataaaagttatagctcagccacaagactttctctc
gaagcatggtctggtgcacagattgatgtggatctggtggaggctacacttgaacatatt
tgccgtcatgaaggtggtggggcgattcttgtcttcctcactggctgggatgagatttcg
aaactgcttgagaaaatcaacgggaacagactgcttggagattctagcaagttcttaatt
cttcctctgcatggttcaatgccgacggttaatcaacgtgaaatttttgaccggccacct
cctaataagcggaaaatagttttggctacaaacattgccgagagtagtattacaattgat
gatgttgtatatgttgtggattgcggtaaagcaaaggaaactagctatgatgctttgaac
aaggtggcatgtctcttgccatcatggatttcaaaggcttcagcacaccagagacgaggt
cgtgctggacgtgtccaagctggagtttgctacaggttgtatccaaaagtcatctatgat
tctttcccacagtatcagttaccagaaatcatacggactccactgcaagagttatgcctg
catatcaaaagtttgcaggttggatccataggatcattcttggccaaggcattgcagcca
ccagatgcacttgctgttgagaatgctattgaacttctcaaaacaattggggctttagac
gacattgaagatcttacaccccttggtcggcatctttgcactctacccgtagatccaaat
ataggaaagatgcttctgattggagctatcttccagtgcgtcaatcctgctttgacaatt
gccgctgcgctggcatatcgtagcccatttgtcttaccgttaaataggaaagaagaagct
gatgatgctaaaagatattttgctggtgattcctgtagtgatcacattgcccttcttaag
gcatatgaaggatatcgggatgcaaagcgtggtggaaacgaaaaagatttttgttggcaa
aactttctttcccctgtaactctaaggatgatggaggatatgagaaaccagtttcttgat
cttttatcagatataggtttcgtagacaaatcaaggccaagtgcatacaaccaatacagc
caagacatggagatggtaagcgcggttttgtgtgcggggctgtacccaaatgttgtgcaa
tgcaaaagaagagggaagcgcactgcattctacactaaagagttgggtaaagttgatatt
catcctggatctgtcaacgcaagagtaaatctcttctcgttgccgtatttggtctacagc
gaaaaggtgaagacgacaagtgtatatatccgagactcaacaaacatatcagattatgca
ctccttatgtttggtggcaatcttatcccaagcaaaaccggggaaggtatagagatgttg
ggtgggtatctccatttctctgcctcaaagaacgtcttggaactgatacagagattgcgg
ggagaggtggacaagctgctgaataagaagatagaggatccgagtttggacataactgtg
gagggaaaaggagtggtttcagctgtggtggagttgttgcgtagccgaaacatcaggtat
taa
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