Camelina sativa (false flax): 104792425
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Entry
104792425 CDS
T05044
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
csat
Camelina sativa (false flax)
Pathway
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104792425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104792425
03019 Messenger RNA biogenesis [BR:
csat03019
]
104792425
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104792425
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104792425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
104792425
NCBI-ProteinID:
XP_019102496
LinkDB
All DBs
Position
6:complement(19768587..19775650)
Genome browser
AA seq
971 aa
AA seq
DB search
MDNSRRPFDRSRDPGPMKKPRLSEEPIRPVNPNVRQFSSQRTLGTAAAVTVPQPATSRFR
VSGRETESNIVSDPSREAYQPQPVHPHYELVNQYKSALAELTFNSKPIITNLTIIAGENV
HAAKAVVSTICNNILEVPSDQKLPTLYLLDSIVKNIGRDYIKYFGARLPEVFVKAYRQVD
PPMHSNMRHLFGTWKGVFHPQTLQLIEKELGFNAKSDGSAAVVSTARGDPQSQRPPHSIH
VNPKYLERQRLQQSGRTKGMVTDVPEIEPNLTRDSDRLERVSSIASGGSWIGSAKVNTIR
RPSEPLYEKDIESIAGEYDYASDLPHNSRSVIKKVGSRVTDDGCEKPWYGAMSRGPDLIS
DQRDGLHTKSRTSNYGIARIENLESSGPSRNIGVPYDSWKNSEEEEFMWDMHSRLSETDV
ATINPKNELLAPDESERLGSETHLIKRPRFSALDPRFDPVNSTYSNEQKDPSIYGHWTSS
PQSLHDSEVFSSINATSTAARKGIQPQPRVVGSGILPSLDRQSPLQDSTSKQNVTKQDVR
RAHSLPQRDPRASRFPAKSQNVPRDDSVRLPSSSSQFKNAIMRELPDASQVGIFDSKSAT
ANASDLSIASQATGQSNMSDLLEAVMKSGILSINSTCGALKESSQNEVNPGVLAALSAAT
KPKTLPIPVADDNLLARLKVEQSSAPLVSCAASLAGITSVQTSEENSKAADPLSCLLSSL
VSKGLISASKTELPSPPSITQDHSPDHSTNSSMSVSVVPSDAQPSVSVKKGPSTAPKVKE
LVAPSETTKNEPEDLIGLKFRADKIREVHPLVISSLFDDIPHLCTSCGIRLKEKEELDRH
LELHEKKKLELSGTNSKCRVWFPKVDDWIAAKSGELEPEYEEILSEPESAIEDTPAVAAD
ETQCACILCGEVFEDYFSHETAQWMFKGASYLTDSPANSEASGPIVHARCLTTSSLQSLE
VGNAIKQEIVE
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggataattcgcgtaggccgtttgatagatccagagatccaggtccgatgaagaaaccc
aggctcagcgaggaaccaatccgacctgtaaatcccaacgtgcggcaattttcgtcgcag
agaacgcttggtacggctgcggcggtgacagtaccacaaccggcgacgtcgagatttcgg
gttagtggcagagaaactgagagtaatattgtcagtgatccgagccgagaggcttaccag
ccacagccggttcatccacattacgagcttgtgaaccagtacaagtcggcactggctgag
ctcactttcaactcgaagccaataataacaaaccttacgataatcgctggagagaatgtt
cacgctgctaaagccgtcgtttccactatttgcaacaacatcctcgaggtaccaagtgat
cagaagctgccaacactgtacctgttagacagcattgtgaagaacatcggaagagattac
attaaatactttggtgccaggctgcctgaggtatttgttaaggcttacaggcaagttgac
cctcctatgcattctaacatgcggcatctctttggaacctggaaaggagtctttcatccg
caaacacttcaacttatagagaaagaacttggttttaatgctaaaagtgatggttcagca
gctgttgtatccacagccagaggtgatccgcaatctcagcgcccgccacatagcatccat
gtgaatcccaagtatctagaaaggcagcgccttcaacagtctggacggacaaaaggaatg
gttactgatgtccccgagatcgaacccaatttgactagggattcagatagactggagaga
gtttcaagcatagcatctggaggctcgtggataggttcagctaaagtaaataccattcgg
cgacctagtgaacccctgtacgagaaagatattgagtcaatagcaggggaatatgattat
gcttctgatctaccccataactctagatcggtgattaagaaagttggttcaagggttact
gatgacggatgtgagaaaccatggtacggagctatgagcaggggtcctgatctgatttct
gaccaaagggatgggttacatactaaaagcagaacttccaactatggtatcgctagaata
gaaaatttggaatcaagtggtcccagcagaaatataggtgtaccttatgatagttggaaa
aactcggaggaagaagagtttatgtgggatatgcactcaaggttatcagaaactgatgtt
gccactatcaacccaaagaatgagcttcttgcaccagatgaatcagagagactgggatcg
gaaacccaccttattaaacgaccaaggttttcagctctggacccaaggttcgaccccgtg
aattcaacatattccaacgaacaaaaagatccaagtatttatggccactggacgtcttct
ccacaatcgttgcatgattcagaagttttttcttctatcaatgcaacctctactgcagct
agaaagggaattcagcctcaacctagggttgtcggctctggaattttgccaagcttagat
agacagtcgcctttacaggattcaacttctaaacagaatgtgaccaagcaagatgttaga
agagctcactcccttcctcaacgtgatccaagggcttcccggtttccagcaaaatctcag
aatgtccccagggatgactctgtacggctcccatcttcaagtagtcagtttaaaaacgca
attatgcgtgaactacctgatgcatctcaagtgggaatatttgactctaagtcagcaact
gcaaatgcgtcagacctttctattgcctctcaagctacaggacaatccaacatgagtgat
ttgctggaagctgtcatgaagagtggaatcctttctattaattcaacatgtggtgcgctc
aaggagagttctcagaatgaggttaacccaggggtactagccgccctctctgcagccact
aagccaaagactttaccaattccagtggctgatgacaatttattagctcgtttaaaagtt
gaacaatcctctgcaccacttgtctcatgtgcagcgtctcttgctggcatcacatcggta
caaacgtcagaagagaatagtaaggccgcagatcctctttcatgcctcttaagctcatta
gtttcaaagggtttgatatctgcttcaaagacagagctgccatcgcctccttccataacg
caggaccatagtcctgatcattccaccaatagctctatgtctgtatctgtggttccatca
gatgctcagccatccgtttcggtgaaaaaggggccatctactgccccaaaggtaaaagag
ttagttgcaccatctgaaacaacaaaaaatgaacccgaagacctcataggattgaagttt
agggcagacaaaatccgcgaagttcaccccttggtcattagtagtctctttgatgacatt
ccacatctctgcacctcctgcggcattcgccttaaagaaaaggaagaacttgataggcac
ctggagctgcatgaaaagaagaagctcgaactcagtggcacaaacagtaaatgtagggtt
tggtttccaaaggttgatgactggatagcagcaaaatctggagagttagaacctgaatat
gaggaaattctaagtgaacctgagagtgctattgaggatactccagcagtagctgctgat
gagacccaatgcgcatgtatattatgtggagaagtgtttgaggattatttcagtcacgaa
acggctcaatggatgttcaagggagcttcgtacctgaccgattctccagccaacagtgag
gccagtggtcctatcgtccatgcgcgttgtttgaccacgagttcattgcagagcttggaa
gttggaaatgcaatcaagcaggaaattgtcgagtag
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