Camelina sativa (false flax): 104792743
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Entry
104792743 CDS
T05044
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
csat
Camelina sativa (false flax)
Pathway
csat03013
Nucleocytoplasmic transport
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104792743
03015 mRNA surveillance pathway
104792743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104792743
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104792743
mRNA cycle factors
P-body specific factors
104792743
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Glycos_transf_N
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
104792743
NCBI-ProteinID:
XP_010517262
UniProt:
A0ABM0ZL45
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Position
6:complement(21359501..21374452)
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AA seq
1175 aa
AA seq
DB search
MDHPEDEIHNSEKQDDEEALARIEEIKKSIEAKMTLRQNNLNPERPDTAYLRTLDSSIKR
NTAVIKKLKQINEELREGLMDDLRGVNLSKFVSEAVTAICEAKLRSSDIQAAVQICSLLH
QRYKEFSPSLTQGLLKVFFPGKSTEDLEADKNSKAMKKRSTLKLLLELYYVGVIEDSNIF
INIIKDLTSVEQLKDRDTTQTNLTLLASFARQGRVFLGLPISGLDEDFFKGLGVTADQKK
SFKKAFNTYYDALADLLQSEHKLLHQMEKDNAKLVNAKGELSEDSASSYEKLRKSYDHLY
RNISSLAESLDMQPPLMPEDGTTRLTAGDEASPSGAVKDTSAPEPIWDDEDTKTFYECLP
DLRAFVPAVLLGEAESKSSEQSAKAKDKSSESSSDIVESQQTTEDTITEVPADSGSMADG
SNTEQPKEKEEVEKEKAKDTKKEKGKEKDSEKKLENEKEKGKSLDVANFERLLQRLPGCV
SRDLIDQLTVEYCYLNSKTNRKKLVKALFNVPRTSLELLGYYSRMVATLATCMKDIPSML
VQMLEDEFNSLVHKKDQMNIETKIRNIRFIGELCKFKIVPAGLVFSCLKACLDEFTHHNI
DVACHLLETCGRFLYRSPETSLRMTNMLDILMRLKNVKNLDPRQSTLIENAYYLCKPPER
SARISKVRPPLHQYIRKLLFSDLDKESIVNVLKQLRKLPWSECEQYILKCFMKIHKGKYG
QIHLIASLTSGLSRHHDEFAVAVVDEVLEEIRVGLELNEYGAQQKRLAHMRFLGELYNYE
HVDSSVIFETLYLTLLYGHDTSEQEVLDPPEDFFRIRMVIILLETCGHYFDRGSSKKRLD
QFLIHFQRYILSKGHLPLDIEFDLQDLFANLRPSMTRYATIEEVNAAILQLEEREHYSSG
DKVSVERHSDTKPPSRSSSVVKDIGENGEAHGEESDSDSGSGSVVRDGQNEELDDGNHDR
GSESDDGDDYDDGVGPGSDDDNEFRVRQKVVTVDPEELADFDQELKALLQESMEQRKLEL
RGRPALNMTIPMSVFEGSGKDHHFGRLVGENGEELLDEENGEQREVQVKVLVKRGNKQQT
RQMLIPSDCSLVQSTKQKEAAELEEKQDIKRLVLEYNERDEEEANGLGTQILNWTPGGGR
GFTRGTGEGSGSRGGSRHRFYYHQGGGGSYHARRK
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggatcatccagaagatgaaatccacaacagcgagaaacaagacgacgaggaagctctt
gctcggattgaagagattaagaagtcaattgaagctaaaatgactcttcgtcaaaataat
ctcaatcctgaacgacctgatacggcatatcttaggactcttgattctagtattaagcgg
aatacagcagttatcaagaagttaaagcagattaatgaggagttgcgagaagggttgatg
gatgatctgcgaggtgttaatcttagcaagtttgttagtgaagctgttactgccatctgt
gaggctaagctcagaagctctgatattcaagctgctgttcagatttgctcgctacttcat
cagaggtataaagaattttctcctagtctaacacaagggctcttgaaagtcttctttcct
ggaaaatctaccgaagatttagaagcggataaaaactcaaaggccatgaaaaagcgcagt
accctaaaacttcttctggagctttactatgttggagtaattgaagatagtaacatcttt
attaatattattaaggatcttaccagtgttgaacaactgaaagacagagatacgacccaa
acaaatctgacacttcttgccagttttgctcggcaaggaagagtttttctggggcttcct
atttctggactagacgaagattttttcaagggtctcggcgtaactgctgatcagaaaaag
agttttaagaaagctttcaacacatattatgatgctcttgcagatctccttcagtctgaa
cacaagttacttcaccaaatggagaaggacaatgcgaaactggtaaatgctaaaggggag
cttagtgaagacagtgcatcttcgtatgaaaagctgaggaaatcatatgaccatctctat
cgaaatatctcatctttggccgaatcacttgatatgcagcctcctcttatgccagaggat
ggtacaactaggctcacagcaggggacgaagcctcaccctctggtgctgtaaaagataca
tctgccccagaacctatttgggacgacgaagacactaagacattttacgagtgcttacct
gatctgagggcatttgttcccgcagtattattgggagaagcagaatccaaatcaagcgag
caatctgctaaagcaaaagataaatcatctgagtctagctctgatattgtcgaaagtcaa
caaacaactgaagacacaataacagaggttcctgctgattctggtagtatggctgatgga
tcaaatactgagcagccaaaagagaaggaagaagtagagaaggaaaaggctaaagatact
aagaaggaaaaagggaaagaaaaggatagtgagaaaaaattggaaaatgagaaggagaaa
ggtaagagtcttgacgtggcaaacttcgaaagattgttacaacgactacctggttgcgta
agccgtgatcttattgaccaattaacggtggaatattgttatttgaattccaagacaaac
agaaaaaaacttgtcaaagcgttatttaatgtccctaggacatctctggagttgctagga
tactattcgcgtatggttgcaacactagcaacgtgcatgaaggatatcccgtctatgctt
gtgcagatgttggaggacgagtttaattctctggtccataaaaaggaccaaatgaatatc
gaaacaaaaatccgaaacatcagatttattggagaactctgcaagtttaaaattgtacct
gctggacttgtattcagttgtttaaaggcttgcttagatgaatttactcatcataacatt
gatgttgcttgccatcttctggagacatgtggccgtttcctttatcgatctcccgaaacc
tcactcaggatgacaaatatgctggacatattgatgcgcctgaaaaatgtcaagaattta
gatcctcgccaaagcactcttatagaaaatgcctactacctttgtaaacctcctgaaaga
tcagcaagaatttctaaagttcgtccaccattgcatcagtatattcgaaaactgctattc
tcggatcttgataaagaatccattgtgaacgttctgaagcaactgcggaagctgccttgg
agtgaatgtgagcaatacatcttaaagtgctttatgaagattcacaagggaaagtatggt
cagattcacttaattgcttccttgacttctggtttgagccgccatcatgatgagtttgca
gtggctgttgttgatgaggtcctggaggagataagggttgggcttgagttgaatgaatat
ggggcacaacagaagcgactagcccatatgagatttttaggggagctgtacaattatgag
cacgtagattcatctgtgatattcgagacgctttatttaactcttttatatggtcatgat
acttcagagcaagaggtgctggatccaccagaagattttttccgtatcaggatggttatc
attcttctggaaacctgtgggcactactttgatcgaggttcatcaaagaaaaggcttgat
caatttttgatacacttccagagatacatactcagcaagggtcaccttcccctggatatt
gaatttgacttgcaggatctatttgccaatttgagacccagtatgacccgttacgcaacc
attgaggaagtcaatgcagctatactgcagctggaagagcgtgaacattattcttcagga
gacaaagtcagtgtagaaagacactcagacacaaagcctccaagtaggtcatcgtcagtt
gtaaaagatattggagagaatggagaagctcacggagaagaaagcgacagtgattctggt
agtggctccgtggtccgagatggacagaacgaagagttggatgatggaaatcatgaccgg
ggatctgagagtgacgatggggatgactatgatgatggagttggacctggatctgatgat
gataacgaatttcgtgttaggcaaaaggtggtaactgtagatcctgaggaattagcagac
tttgatcaagaactcaaggctttacttcaggagagcatggagcaaaggaagctagaatta
cgtggtagaccagcattgaacatgacaataccgatgagtgtttttgaagggtctggaaaa
gatcatcattttgggcggttagtaggtgaaaatggagaagaattgttggatgaagagaac
ggagagcaaagagaggttcaagtaaaggtcctggtgaagagagggaacaaacaacaaaca
aggcaaatgctaatcccgagtgattgttcgctagtgcagagcacaaaacagaaagaagct
gcggaattggaagagaaacaagacataaagaggttagtactcgagtacaatgagagggat
gaagaggaagcgaatgggttagggacacagatattgaattggactcctggaggaggcaga
ggattcactcgaggtaccggggaaggcagtgggagtcgcggcgggtctcgtcaccggttt
tattatcatcaaggaggtggtggttcgtatcatgcccggcgaaagtaa
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