Camelina sativa (false flax): 104792941
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Entry
104792941 CDS
T05044
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH-like
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
csat
Camelina sativa (false flax)
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csat04121
]
104792941
Enzymes [BR:
csat01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104792941
Ubiquitin system [BR:
csat04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104792941
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Helicase_C
zf-C3HC4
zf-RING_UBOX
PHD
RING_XB3-XBAT31
zf-RING_2
zf-C3HC4_2
PHD_5
RNPP_C
SVIP
TPR_2
TPR_12
TPR_11
TPR_1
TPR_10
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
104792941
NCBI-ProteinID:
XP_010517516
UniProt:
A0ABM0ZLR4
LinkDB
All DBs
Position
6:complement(22271466..22280957)
Genome browser
AA seq
1656 aa
AA seq
DB search
MGRRKQSKPQRSVGLITQTGSESDGKKLPGEEAEGSGEKIVEDIDKPYYVNICLSSPVSE
QQQQHFDLAEVVLTNLSLRERVGNSSKNDHDLDCSLRVRLCNVTSFVDRIKLGHWPVLSS
SDITLELVDKKVSDDEAESVIWSASFDGPGEGVSGLAHLASIKFLTLRLVPGNQGLLSPR
VRVEMLQQAFDACDSLLENTRQIWKKSMVHVMSWLRPEVMTSEARYGTQLNVKETESSVV
LEGETLDSSKKFRFDAAAFYEAIKPSKMDPMLEDDITDLLPELRPYQRRAAYWMIQRERG
DPITLGEKEDNQFISPLSISVGFLDSATKMFFNPFSGNISLAPEYFSPRIPGGILADEMG
LGKTVELLACIFSHRKPAEDEIYVSNGQSVTDDRNTGFKRLKRERVECICGAVSESRKYK
GVWVQCDLCDAWQHADCVGYSPKGKGKKTSQHVDEKVSQKKSKKDATEIIVRQGEYICKM
CAELLQVTASPISTGATLIVCPAPILSQWHSEITRHTRLGSLVTCIYEGVRNVSLSEEPV
IDITELLNADIVLTTYDVLKEDLTHDFDRHDGDRHCLRFQKRYPVIPTPLTRIFWWRICL
DEAQMVESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLSGLLRFLKADPFDVSRWWIE
VIREPYERRDAKAMEFTHKFFRQVMWRSSKVHVADELQLPPQEECVSWLKFSAIEEHFYS
RQHETCVSYAREVIETLKRDILKRGHTSSDNPLITHAEAAKLLKSLLKLRQACCHPQVGS
SGLRSLQQTPMTMEEILMVLVKKTQNEGEEALRVLIVALNGIAAIAMLKQEFSEAVSLYK
EALNITEENAEDFRLDPLLNIHILHNLAEILPLAESYSAASERPKTKIDENDDGHHRASK
RQRINELDSLTHDSSETAQQGEAISPDNGLKKDKECHEECKTLNIVCHTLKVKYLSSFNS
KLSAAQQEFRKSYSQVSESLSNMETQRSSWWLDALQLAEQNKDFSSELIRKIEEAIHGGF
NKSSSTRANSRFRTIHAMKLHLQTSMDMLESSRKKAIDRILEIDQTMEKPKMEDIERIGN
CKYCNKKDDGPTCIHCELDELFQEYEARLFRFNKSRRGLMELAAAEETVHLQKKRSALNL
FFIGLSSKNKDSNAPHGDNEEPTKRNAGDAVFVSKSPSQTEIVLGVIRNQCKSYLDGENK
SAATKHLHTLEVMRKEYAHARALGRAQAQLLRAYDEINMSTMRLQLRESEDDTSLYALSQ
DELDVASVLNTNDKFMAQSSLLSIKGKLRYLKGLMKSKQKQELENPDRSSPIQETVKASD
PVEQDGENLLKRDEACPICQEILRNQKMVFQCGHSTCCNCFFAMTERKSVQETQQKWVMC
PICRQHTDVRNIAFADDRRDSSSSDQDHKDNEASLVVQGSYGTKIEAVTRRILWIKSSDP
QAKVLVFSSWKDVLDVLEHAFAANSITFIRMQGGRKSQTAISKFKESEKETQKTNSHPKD
TKSIQVLLLLVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVGRVHRIGQEKPTLVHRFL
VTGTVEESIYKLNRNKNTNLNSFSSRNTKNQDQQFLTLRDLESLFASPAAETAEMEENTG
ERQKNLRDLPPSVAAALAAERRMKESNASSSTTNAS
NT seq
4971 nt
NT seq
+upstream
nt +downstream
nt
atgggtaggagaaaacaatccaagccacaacgttcagtgggtttgatcactcaaaccggt
tctgaatcagatggaaagaaattacccggtgaagaagccgagggttctggagaaaagatt
gttgaagatatcgataagccgtattatgtgaacatatgtttaagtagtccagtttcagag
cagcagcagcagcactttgatttagctgaagttgttctaacgaatttaagtttgagagaa
cgtgtaggaaatagtagtaagaatgatcatgatcttgattgctcattacgggttaggcta
tgtaatgtgactagttttgttgatcggattaagcttggtcattggccggtattgtcttcg
agtgatataactttggaattggttgataagaaggtgtctgatgatgaggctgagtcagtg
atttggtctgctagttttgacggtccaggtgaaggggtttcgggtcttgctcatttggca
agtatcaagtttttgactttaaggctcgtgccgggtaatcagggcttgttgtctcctaga
gttagagttgagatgcttcagcaagcctttgatgcttgtgattcgcttcttgagaataca
cggcaaatatggaaaaagagtatggttcacgttatgtcttggttgaggccagaggtaatg
acatcagaggctaggtatgggacacaactaaacgtgaaggaaactgagtcatcagtcgtg
ttggaaggtgaaactttggactctagtaagaagtttaggtttgatgctgctgctttttat
gaagccataaagccatcaaagatggatccgatgcttgaagatgacataactgatttgctc
ccagaacttaggccgtaccaacgacgtgcagcttattggatgattcagcgagagagagga
gatccaataacgttgggagagaaggaagacaaccaattcatttcacctttgtctatctcc
gtgggattccttgactctgctacaaaaatgttctttaatccatttagtgggaatatctca
ttggctccagagtatttttcacctcgaattccaggcggtattcttgctgatgaaatggga
ttgggaaaaacggttgaactacttgcatgcatcttttctcatcgaaaaccagccgaggat
gaaatatatgtgtctaacgggcaatcagttaccgatgatcggaacactggttttaaaaga
ttgaaaagggaacgtgttgagtgcatatgtggagctgtcagtgaaagtcgcaaatacaaa
ggagtctgggtacagtgtgacctttgtgatgcttggcagcatgctgattgtgtaggttat
tcacctaaagggaaaggtaagaagactagtcaacatgttgatgaaaaagtgtctcaaaag
aaaagcaaaaaggatgcaacggaaattattgtcagacaaggtgaatatatttgcaaaatg
tgcgctgaacttctacaagtcactgcctctcccatctctacgggtgccactcttattgtc
tgtccagctcctatattatcacaatggcattccgagattacacggcatacgcgcttgggt
tcactcgtaacatgtatctatgaaggtgtgaggaatgtctcactctctgaagaacctgtg
attgacatcactgaactcctcaatgctgacattgttttaactacatatgatgtcctcaaa
gaggacttgacacatgacttcgacaggcatgatggtgaccggcactgtcttagatttcaa
aaaaggtaccctgttattcctactccactcaccagaatattctggtggaggatttgcttg
gatgaggcccaaatggtggagagcaatgcagctgctgcaacagagatggcgttgagatta
tataccaaacaccgttggtgtatcactggaactcctatacaacgcaaacttgatgacttg
tctggactgttgaggttccttaaagcagatccgttcgacgtgtcaagatggtggatagaa
gttataagagaaccgtacgagagacgagatgcaaaggctatggaatttacgcacaaattt
ttcagacaagttatgtggcgttcttcaaaagtccatgtggctgatgaattgcaactccca
cctcaagaagaatgcgtctcgtggctcaaattttctgcaattgaagaacacttctacagc
agacagcatgaaacttgtgtgagttatgcccgtgaagttatagaaactttgaaacgtgat
attcttaaaagaggtcatacttcttctgataatcctttaatcactcatgcggaagctgca
aaactgctgaaatcgctcctgaaattgcgccaagcttgctgccaccctcaagtaggaagt
tcaggtttacgttcattgcaacaaactccaatgaccatggaagaaattctaatggtcctt
gtgaaaaagactcagaacgagggagaagaagctcttagagtgttaatcgttgcattaaat
gggattgctgctattgccatgcttaagcaagaattttccgaagcagtatcgttatacaaa
gaagcattgaatataactgaagagaacgccgaggactttcgtcttgatccattgttaaat
attcacattcttcacaatttagctgagatactacccttggccgaaagctacagtgctgcg
tcagaaaggcctaaaactaaaatagatgaaaatgatgacggtcaccatcgtgcatcgaaa
aggcaaaggatcaatgagctcgatagtttaactcatgattcttcagaaactgcacaacag
ggggaagccatttctccagacaatggtttaaagaaggataaagaatgtcatgaagagtgc
aaaactctgaatatagtttgtcacacattgaaagttaagtatttatcctcattcaactca
aaactttctgccgctcagcaggaattcagaaagtcatatagtcaggtttccgagtcattg
agcaatatggagacacaacgttcgagttggtggttggatgccctgcaacttgctgaacaa
aataaagacttctctagcgagttgatcaggaagattgaagaggccatccatggaggcttc
aacaaatcaagctccaccagagcgaattctcgctttagaactatacatgccatgaaactt
catctgcagacttctatggatatgctggaaagctctagaaagaaagcgatagataggatt
ctagaaattgaccagactatggagaaaccaaaaatggaggatattgagcgtattggcaac
tgcaagtattgcaacaagaaggatgatggccccacgtgtattcattgcgagctagatgaa
ctattccaggaatacgaggctaggctatttcgttttaacaaatctcgtaggggattaatg
gaacttgcagctgctgaagagacagtacatttgcagaagaagagatctgccctcaatctt
ttctttattggtttgtcatcaaagaataaggattcaaatgcaccgcatggtgacaatgag
gagcccaccaaaagaaatgctggtgacgctgtgttcgtttcaaaatctccatctcagacg
gaaatagttcttggagtgataagaaaccagtgtaaaagctatttagatggggaaaataaa
tcggcagccacaaaacatttgcatacccttgaggtgatgcgaaaggaatatgcacatgca
agggctttgggtagggctcaagctcaactcctacgagcctacgatgagattaacatgtca
acaatgagactacagcttagagaatctgaagatgacacatcgctctatgctttgagccaa
gatgagttagatgttgctagtgtactgaacacaaatgataaatttatggctcaatcctcg
ttgcttagtataaaaggaaaacttcgttatttgaagggtttgatgaaatccaagcagaaa
caagaattagagaatccagatcgttcctcacccatacaggaaacagtcaaggcttcagat
cctgttgaacaggatggcgaaaaccttcttaagagagatgaagcatgcccgatatgtcaa
gaaatcctacggaatcagaagatggttttccagtgcgggcattccacttgctgtaactgc
ttttttgctatgactgagcgaaaatctgtacaagaaacgcagcaaaagtgggtgatgtgt
ccaatatgcaggcaacatacagatgttagaaatattgcatttgctgatgacagacgagac
agttcttcgtcagatcaagatcacaaagacaatgaagcatcattggtggttcaaggttca
tatggaacaaagatcgaagctgttactagaagaatcttatggatcaagtcaagtgaccca
caagcgaaggttctagttttttccagctggaaagatgttcttgatgtgttagaacatgcc
ttcgctgccaatagcatcacctttatccggatgcaaggaggcaggaaatcacagacagcc
attagcaaattcaaggaatctgagaaagaaacccaaaagacaaactcccatccaaaagac
acaaaatcaattcaagtcctattgcttttggtgcagcatggtgccaacggtcttaatctt
ctagaggcgcagcatgtaattctggtggaaccgcttctaaatccggctgcggaagcgcaa
gctgttggtcgtgttcaccggattgggcaagagaaacctactctagttcatcgtttcctg
gtaacgggcacagtggaagaaagcatctacaaactgaacagaaataagaatacaaactta
aattcattcagcagcaggaatacaaaaaatcaagatcaacagttcttgacactgagagat
ctcgaatctctatttgcttcaccagcagcagaaacagcagagatggaagaaaacacggga
gaaagacagaagaatctgagagatctaccgccctcagttgctgcagcattagcagctgag
aggaggatgaaggaaagtaatgcatcctcatcaactacaaacgcatcatga
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integrated database retrieval system
