Camelina sativa (false flax): 104793061
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Entry
104793061 CDS
T05044
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104793061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104793061
Spliceosome [BR:
csat03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
104793061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_EML
NBCH_WD40
Beta-prop_IFT122_1st
PRP4
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SCAP
WD_LRWD1
eIF2A
Beta-prop_SPT8
WD40_like
STELLO
PROPPIN
Nbas_N
Motif
Other DBs
NCBI-GeneID:
104793061
NCBI-ProteinID:
XP_019082312
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Position
6:complement(22978541..22982132)
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AA seq
557 aa
AA seq
DB search
MEPNKQDNNLSLTPTAQITAPPILQDASSSQPGFSALPPVVPPSFPPPMAPIPMMPHPPV
ARPPTFRPPVSQNGEAKTSDSDSDSDDEHFEISEGSRQVRERQEKAMQDLLVKRRTAAVA
VPTNDKSVRDRLRRLGEPITLFGEQEMERRARLAQLMGRLDLNGQLDKLLEAHDEDAAPK
EEVDDDVPEYPFFTEGPKELREARIEIAKFSIKRAAVRIQRAKRRRDDPDEDMDAETKWA
LKQARNMVLDCSNFGDDRPLTGCSFSRDGKILATCSLSGVTKLWEMPQVTKKIAVLKDHK
ERATDVVFSPVDDCLATASADRTAKLWKTDGTLLQTFEGHLDRLARVAFHPSGRYLGTTS
FDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAASSGLDSLARVWDLRTGRSILV
FQGHIKPVLSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEG
YFLATASYDTRVNIWSGRDFSLVRSLAGHESKVASLDITADSSCIATVSHDRTIKLWTSS
GNGEDEDEGKDTMDIDI
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggaacccaacaagcaagataataatttgtcattgacacctactgctcaaatcacagca
cctccaattctacaagatgcctcgtcgtctcagccaggtttctctgccttaccacctgtg
gttcctccttctttccccccaccaatggcccctataccaatgatgccacatcctccagtt
gcccgcccacctacttttaggccacctgtttcacaaaatggtgaagccaaaaccagtgac
tcggattcggattcagacgatgaacattttgagatttctgaagggagcaggcaggtcaga
gaaagacaggaaaaggcaatgcaagatctgttggtaaagcgtcgtactgctgctgtcgca
gttccaacaaatgacaaatctgttagggatcgccttagacgacttggggagcctattact
ctatttggagaacaggaaatggagagaagagctaggttggctcagcttatgggtaggctt
gatttgaatgggcagttggataaactgcttgaagctcacgacgaagatgcggctccaaaa
gaggaagtggatgatgatgtaccagaataccctttttttaccgagggtccaaaggaactt
agagaggctagaatagaaattgccaagttttctatcaagagagctgctgtcaggattcag
cgtgcaaagcggcggagggatgatccagatgaagatatggatgcagagactaagtgggct
ttaaagcaggctagaaacatggtccttgattgcagtaattttggagacgatcgtcctctt
actggctgctccttctctcgtgatggaaaaatacttgccacatgttctctaagtggagtt
acgaaactgtgggagatgcctcaagttacaaaaaagattgctgtcttgaaggaccacaaa
gaacgtgcaactgatgtagttttctcccctgtggatgattgtctagcaactgcttctgct
gatcgaactgcaaagctgtggaaaactgatggaacgctcctacaaacttttgaaggtcat
ttggatcgtcttgcacgggttgccttccacccatcaggaagatacctgggaacaaccagc
tttgacaaaacatggagattgtgggatataaacacaggtgcagagctgcttttgcaagaa
ggtcacagtcgcagtgtttatggaattgcatttcaacaagatggagcattagcagcttct
tctgggcttgattcactcgcacgggtttgggatctccgcactggtaggagtattcttgtc
ttccaaggacacatcaagcctgtactctcagtgaatttctctcctaatggttatcacttg
gcatctggtggtgaggataatcaatgccgtatttgggatctgagaatgagaaagtcactg
tacattatcccagctcatgctaaccttgtgtctcaagtgaagtatgaaccacaagaaggc
tacttcctggccactgcctcatacgacacaagagtcaatatatggtcgggaagagatttc
tcgctcgttagaagcttagcagggcatgagtcaaaagttgcctcgctcgatatcactgca
gatagctcgtgtatcgccactgtatcgcatgaccgcaccatcaagctttggacgagcagt
ggaaatggtgaagatgaagatgaagggaaagatacaatggacatagatatttag
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