KEGG   Camelina sativa (false flax): 104793314
Entry
104793314         CDS       T05044                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
csat  Camelina sativa (false flax)
Pathway
csat03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104793314
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:csat03041]
    104793314
Spliceosome [BR:csat03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    104793314
 Complex C
   U5 SnRNP specific factors
    104793314
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EML Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_RIG_2nd NBCH_WD40 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_DCAF12 Beta-prop_HPS5 Beta-prop_NWD2_C Nbas_N KNTC1_N RMC1_N
Other DBs
NCBI-GeneID: 104793314
NCBI-ProteinID: XP_010517955
LinkDB
Position
6:complement(24202811..24204822)
AA seq 343 aa
MEIMPRENENALSGPRPMEWSTVPHNAPQGPGPIGKNRTSSLEAPIMLLSGHPSAVYTMK
FNPAGTLIASGSHDREIFLWRVHGDCKNFMVLKGHKNAILDLHWTSDGSQIVSASPDKTV
RAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLWDMRQRGAIQTFPDK
YQITAVSFSDAADKIFTGGVDNDVKVWDLRKGEATMTLEGHEDTITGMSLSPDGSYLLTN
GMDNKLCVWDMRPYAPQNRCVKIFDGHQHNFEKNLLKCSWSPDGTKVTAGSADRMVHIWD
TTSRRILYKLPGHTGSVNECVFHPTEPIIGSCSSDKNIYLGEI
NT seq 1032 nt   +upstreamnt  +downstreamnt
atggagatcatgccaagagagaatgaaaacgctttgtcaggtcctaggcctatggaatgg
tctactgtcccacacaatgctcctcaaggacctggtcccattggcaagaaccggacatcg
agcttggaggcacctatcatgttgctaagtgggcatccaagtgctgtctataccatgaag
ttcaatccagctggaactctgattgcatctggatcccatgatagggaaatcttcctctgg
agagttcacggggactgcaaaaacttcatggttttgaaaggtcacaagaacgccatcctt
gatcttcattggaccagtgatggctctcagattgtatcagccagtccggataaaactgtc
agagcatgggatgttgaaactgggaagcaaatcaagaagatggctgaacattcttcgttt
gtgaattcttgctgtcccacacgtagaggaccaccgcttatcatcagtggatctgatgat
ggaactgccaagctttgggacatgcgtcaaagaggagccatacaaacattccctgacaaa
taccaaatcacagccgtcagtttctctgatgcagctgataagattttcactggtggtgta
gacaatgatgttaaagtttgggacttgcgaaaaggtgaagccacaatgacacttgagggc
catgaagatacaatcacaggtatgagcttaagtccagacggttcctatcttctcaccaat
ggaatggacaacaagctctgcgtgtgggacatgcgtccttatgctccacagaaccgatgt
gtcaagatctttgatgggcatcaacacaactttgagaagaacctactgaaatgttcatgg
tcacctgatggtaccaaagtcactgctggtagtgcagaccgtatggttcacatatgggac
acaacaagtcggcgtattctgtataagctccccggccatactggctctgtcaatgagtgt
gttttccacccaaccgagcctatcattggatcttgcagtagtgataaaaacatctactta
ggagagatctga

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