Camelina sativa (false flax): 104793454
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Entry
104793454 CDS
T05044
Name
(RefSeq) nuclear pore complex protein NUP62-like
KO
K14306
nuclear pore complex protein Nup62
Organism
csat
Camelina sativa (false flax)
Pathway
csat03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104793454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104793454
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
104793454
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
Nucleoporin_FG
ATG17_like
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
104793454
NCBI-ProteinID:
XP_010518110
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All DBs
Position
6:24788902..24792710
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AA seq
761 aa
AA seq
DB search
MSGFSFGQSNSVGGFSFGSSSVTNSSSAASTTSPLSFSFNQSSNPSSAGFGFGSTAASST
PASSTTPSFGFGASSTPSFGFGSSASSTPSFGFGSSASSTPSFGFGANASSSGSAPSLFG
SSAAAPASAAAPASSPFGFVTSSASQPGSSPFGAPSSSSSAAPSSSLFGASPASASSGSS
SLFGSSSSLFSASSSASASSSPLFGGSSSASASTSPLFGAPSSATASSLPFGVASSTSAS
SSSIFGATGSTPSFSVASSASGSSPSIFGATGSTPSFTVASSASGSSPSIFGAAGSSPSI
FGSSSAAGSTPSLFGSSSSGATASSPSPFGLSTINPSPASASPFSASTGFSFLKSTASST
TTTTASAPPQTASSASSSSSSSFSFGPPASSSFNLSTGSSAAPASSTPGAVFSIATTTTT
TTSSSSTPAATSAPASSAAASTMGFPSFSVSSSATNTTPASSAATFGTAGFSLASSTPAA
GSSSSFTAFAVPQTSTPASSSQPQTTTPTFSFSVPSSTSTTAPATSSAATTQTSLVVASS
SGTSTAVAPVAGSPKLPSEITGKTVEEIIKEWNTELQERTGRFRKQANAIAEWDKRILQN
RDVLLRLEIEVAKVVETQSSLERQLELIETHQQEVDKALQSMEEEAERIYNDERKSLLDD
EAASTRDAMYEQSELVERELEHMTEQIRSIIQSVNANQGGELEAIDGMSPLDVVVRILNN
QLSSLMWIDEKAEEFSSRIQKIASQGSSGDRELMAPKHWMS
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggttttcgtttggtcaatccaattccgttggaggtttctcattcggatcttct
tccgtaactaattcatcttctgctgcatctaccacttctccgttatctttctcatttaac
caatcttcaaaccctagctccgccggatttggtttcggatccaccgcagcatcatcaacc
cctgcttcctccacaaccccatcttttggattcggagcttcctcaactccttcgttcgga
ttcggttcctctgcttcatcgactccttctttcggattcggatcctctgcttcctcgact
ccttcatttggatttggagccaatgcttcttcatctggttctgcgccgtctctgtttggt
tcatctgctgctgctcctgcttctgctgctgctcctgcttcttctcctttcggattcgtg
acttcctcggcttctcagcctggttcttctccgttcggagctccgtcctcctcctcctcc
gcagctccgtcttcatctcttttcggagcttctccggcttcagcgagtagtggttcatca
tctctctttggatcttcctcatctttattctccgcttcttcatctgcttccgcctcgagt
tcacctctctttggaggatcctcatccgcctctgcttcaacatctcctcttttcggcgcg
ccttcttcagccaccgcttcgtcacttcccttcggcgttgcctcatcaacctctgcctcc
tcatcatccatctttggagccaccggctcgacaccttcatttagtgttgcctcatcagcc
tctggctcctcaccttcaatctttggagccaccggctcgacaccttccttcactgttgcc
tcatcagcctctggctcctcaccttcaatctttggagcagccggttcgtcaccgtctatc
tttggttcatcttcggcagcgggttcaactccgtctctctttggatcgtcctcgtcaggc
gcaacagcttcttcaccgtccccgtttggattatctaccattaatccctcgcctgcctca
gcttctcctttctccgcgtctaccggattctctttcttgaaaagcacagcaagttcgaca
actaccaccactgcttctgctcctccacaaacggcttcatcagcttcctcctcttcttct
tcctccttctcatttggtccacccgcaagttcaagctttaacctttcaaccggaagctca
gcagcacctgcctctagcacacccggagcagtgttttctattgcaaccaccaccactact
actacttcttcttcttcgactcccgctgctactagtgcaccagcttcttcagctgcagct
tctacaatgggtttcccttcttttagtgtgagttcatctgccaccaacaccactccggct
agctctgctgctacattcggtactgcaggatttagtttggctagctcgactcctgccgct
ggatctagtagctcctttactgcgtttgctgtaccccagacttcaacacctgcatcatct
tcacaaccacaaaccactactcctacattctcattcagtgttccatcttcgacttctact
actgctcctgctaccagttctgctgctacaacacagacatctcttgttgtggcttcgagt
agtgggacgagcacagctgttgctccagtggctggttctccaaagctgccatctgaaata
actggcaaaactgttgaggagattatcaaggagtggaatactgagctacaagaacgcaca
gggagattccggaaacaggcaaatgcaatagcagagtgggataagcggatcttgcaaaac
cgtgatgttcttttaagacttgagattgaagttgcaaaagtggttgaaacccaatctagc
ttggaacgtcagctggaattaatcgagactcatcagcaagaggttgacaaggctttgcaa
agcatggaggaagaggctgagcgtatatataatgacgagcggaaatcacttcttgacgat
gaagcagcatcaactagagatgcaatgtatgaacagtctgagcttgtagaaagagaattg
gagcatatgactgaacaaatcagatcgattatacaatctgtaaatgcaaaccagggagga
gaacttgaagcaatagatgggatgagtccactggatgtagttgtaagaatcttgaacaat
caactcagttccttaatgtggattgatgagaaagcagaagaattctcttctcggattcaa
aaaatcgcatctcaaggttctagtggagatcgtgaattaatggcaccaaagcactggatg
tcttga
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