Camelina sativa (false flax): 104793552
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Entry
104793552 CDS
T05044
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 6-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104793552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104793552
03036 Chromosome and associated proteins [BR:
csat03036
]
104793552
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104793552
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
104793552
mRNA degradation factors
5'-3' decay
Decapping complex
104793552
Chromosome and associated proteins [BR:
csat03036
]
Eukaryotic type
Gene silencing
piRNA pathway
104793552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
104793552
NCBI-ProteinID:
XP_010518223
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All DBs
Position
6:25295265..25298624
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AA seq
519 aa
AA seq
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MNNNNNNSRGRFPPGIGAAGPNFQSRTPNPNPPQQPQEYLQSRSPFPQQPQTQPPQFLQS
QPDAHQFVQRSYPQTNPQQIQQPQQQWSGGRAQLFSDPSYVDEVEKTVQSEANNDSNTQD
WKATLKLPPRDERYQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIAL
TGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYL
NIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLSKKGVCVLKDCTMLVMDEADKLL
SVEFQPSIEELIQFLPENRQILMFSATFPVTVKSFKDRYLRKPYIINLMDQLTLVGVTQY
YAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDH
RNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRYGHLG
LAVNLVTYEDRFKMYQTEQELGTEIKPIPSLIDKAIYCQ
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgaataataataacaataatagtagaggaagatttcctccggggattggagcggcgggt
cctaattttcagtcacggactccgaatcctaacccgcctcagcaacctcaagagtacctt
cagtcacgttctccgtttccccagcaacctcaaactcaacctccacagtttctccagtct
caacctgatgctcaccagttcgttcaacggtcttacccacagaccaatcctcagcagatt
caacagccacaacaacaatggtctggaggacgcgctcagctatttagtgatccgagttac
gttgatgaagtcgagaagacggttcaatctgaagctaacaacgattctaatactcaagac
tggaaggcaaccttaaagctgcctccacgagatgagcgttaccagacagaggatgtgact
gccactaaaggaaatgaatttgaagattactttttgaagagagatttgcttagaggaatt
tacgaaaaaggttttgaaaagccttcacctattcaggaagaaagcatccctattgcattg
actggcagtgatattcttgctagagccaaaaatgggactggcaagactggtgccttctgc
attcccacccttgagaaaattgatccagagaacaatgtcattcaagctgtgattctcgtt
ccaacccgagagctggcccttcagacatcacaggtttgtaaggagctttccaaatatcta
aacattgaggttatggtcaccactggtggtaccagtctgagagatgatatcatgcgttta
tatcaacctgtacacttgctggttggaactcctggaagaatattagatctttccaaaaag
ggtgtgtgtgttttgaaagattgtaccatgcttgtaatggatgaggccgacaagcttttg
tctgtagaatttcaaccttccatagaggagttgatacagttcttgccagaaaaccgtcag
attctgatgttttcggctacatttcctgtcactgtgaagtccttcaaggatcgatatctc
aggaagccttacattatcaatctcatggatcagctcacacttgtgggtgttacccaatat
tatgcttttgtcgaagagagacagaaggtgcactgtctgaatacactattctctaagctc
caaataaaccaatccattatcttttgcaactctgtcaatcgtgtggagctgttggccaag
aaaatcacagaactcggttactcatgcttctatatccatgctaagatggttcaagatcat
cggaacagggttttccatgatttccgcaatggtgcttgcagaaaccttgtttgcactgat
ttgtttacacgtgggattgacattcaagctgtgaatgttgtcataaattttgattttcct
aggacttctgagtcctatctacacagggtaggcagatcgggaagatatggacaccttggg
ttggctgtgaatctggtaacttatgaggaccgcttcaaaatgtatcaaactgagcaagaa
cttggaactgaaatcaagccaataccttcacttatcgacaaggcaatctactgtcagtaa
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