Camelina sativa (false flax): 104793921
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Entry
104793921 CDS
T05044
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104793921
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104793921
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104793921
Spliceosome [BR:
csat03041
]
Complex C
Other components
Step II factors
104793921
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
HA2_N
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
104793921
NCBI-ProteinID:
XP_019101813
LinkDB
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Position
6:complement(3468054..3469997)
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AA seq
411 aa
AA seq
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MEKEELSKLNHLSLVSNVCNELETHLGSAEKVLAEFIIDLGRHSDTEEIDSACQSLYERM
KGLGKNVPELIILPVYSALPSEMQSRIFDPPPPGKRKVVVATNIAEASLTIDGIYYVVDP
GFAKQNVYNPKQGLESLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMPPTSI
PEIQRINLGMTTLTMKAMGINDLLSFDFMDPPQPQALISAMEQLYSLGALDEEGLLTKLG
RKMAEFPLEPPLSKMLLASVDLGCSDEILTMIAMIQTGNIFYRPREKQAQADQKRAKFFQ
PEGDHLTLLAVYEAWKAKNFSGPWCFENFIQSRSLRRAQDVRKQLLSIMDKCGECGEEFH
EDKESNHGRILLPWSKERSTGRLQDTSGESTGVYTPEQRAVPETTRLGYIS
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagaagagcttagcaaattgaatcacctctctctcgtatccaatgtctgcaac
gagttagaaacgcatctaggatctgcggagaaagttttggcagagttcatcatcgatctc
ggtcgtcactccgatactgaagaaatcgattctgcatgccaatctctatatgagagaatg
aaaggtctaggtaaaaatgttcctgaactcatcatacttccagtttacagtgcccttcct
agtgaaatgcaatctagaatatttgatcctccacctcctggtaaacggaaagtggtcgta
gctacaaatattgcagaagcttctttaacaatagatggtatatactatgttgttgatcct
gggtttgcaaagcagaacgtgtacaatcctaagcaagggctagaatcgctagttattact
ccaatttcacaggcatcggcaaagcaaagagctggtcgtgctggtcgtactgggcccggg
aaatgttaccgtctctacacggagagcgcatatcgtaatgagatgcctcctacatcaatc
cctgaaattcaaagaattaatcttggaatgacaaccctgaccatgaaagccatgggtatt
aatgacctgctatcgtttgacttcatggatccacctcaaccacaagcattgatctctgca
atggaacagttgtacagcctgggggctttggatgaagaaggtttgttgacgaagcttggt
agaaaaatggcagagtttcctcttgaaccgccgctttctaaaatgttgctagcaagtgtg
gatctcgggtgcagcgatgagattttaacgatgattgctatgatccagacgggcaacata
ttttatagaccgagggagaagcaagctcaggcagaccaaaaacgggcaaagtttttccag
cccgagggtgatcacctgacattactggctgtatatgaggcgtggaaggccaaaaacttc
tcaggtccatggtgttttgaaaatttcattcagtcaagatcgttacgacgtgctcaagat
gtgaggaaacaacttctcagcattatggacaaatgtggtgagtgcggggaagaatttcac
gaagataaggaaagcaatcacggcaggattcttcttccatggagcaaggaaagatccaca
ggaaggttacaggacactagtggagaatcaaccggtgtatatacacccgagcagcgcgct
gttccagagacaaccagactgggttatatatcatga
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