Camelina sativa (false flax): 109124452
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Entry
109124452 CDS
T05044
Name
(RefSeq) protein SMG7 isoform X1
KO
K14409
protein SMG7
Organism
csat
Camelina sativa (false flax)
Pathway
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109124452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
109124452
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
109124452
mRNA cycle factors
Common to processing body (P body) and stress granule
109124452
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Rhamno_transf
Coleoptericin
Motif
Other DBs
NCBI-GeneID:
109124452
NCBI-ProteinID:
XP_010492997
UniProt:
A0ABM0XYX4
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All DBs
Position
20:10145249..10150484
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AA seq
1029 aa
AA seq
DB search
MMTLQMDNTTASSSRERAKSLFDKTIELENKRWKAVQDRNPFDLNLWHQIRENYEAILFE
DHAFSEQHNIELILWQLHYKRIENCRGHINAFLSSSSSSAAHNVKGPSRLDQLAKLKLQF
RTLLSEATGFYHDLISKIRSKYGLPLGYFSEDQASQNMADKDGKKLAEVKKGLVSCHRCL
IYLGDLARYKGLYGEGDSKNREYAAASSYYLQAASLWPGSGNPHHQLAIIASYSSDEFAL
TYRYFRSLAVESPFPTARDNLIVAFEKNRQIYAQLFVASKDTSKKPIGKGRGKGRGKGED
TSSKDANLVAGPEKDKVTSAKDMLKAFCIRFVRLNGILFTRTSLETFLDVLTSTSSSLRE
VISSGSMEELSLGIDTSDSALFIVRLVAIMIFSVHNSKKETEGQSYAEIVQRVEPARNSL
TASFELLGHIVEQCVQLRDPSASYFLPGVLVFVEWLACCPDIALGSDPDDRQTTVRNRFW
NQCVTFFNQILSLGPLFIDDVEDETCFSNMSLYDERETENRLALWEDYELRGFLPLLPAQ
TILDFSRKHSFGTEGPKEKKARIKRILAAGKALTSVIKVDQNHVYYDSKKKKFLVGVKPS
DDLLDSHSSPPKADALQDNQVMVKHNSPVMQQDQQICMGEEDDDEVIVFKPLVTEKRKEA
SDQIYVSNGGFRKPDQVATTENLKPLSGVDSAFHENQFLQARGNASIQVPASIGSNLLGL
LQASTQSQASHLQQVQTQAVNPQSAQSLAAARLQPIQSQVAQLQPLPSRVVHFQQTQAPL
SHVSLVQSQSASLGGGTKWLPEEAASLASSQSSFAQMGNGHVMRNEIQGNHGVSYHPAHS
LPVYQSYNVNGMGGMPSQSRTSEAVFPPKSDTVSSSGVIADGLGVQSSIARKNPISRAFR
HLGPPPGFNTVPSKLQKEPVPGSDLSGNNLAVDDYRWLDGYETQSSRGAGLNSSLNYASK
SEQMGTSNGMNGAANFPFPGKQIPTSQVQADLPYFQNPQKDSFVNQNHQSAQLPEQYQGQ
STWSSRHFV
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgatgactttgcagatggataatactactgcttcctcctcaagggagcgagccaagtcc
ttatttgacaagactattgagttagaaaacaagcgttggaaggctgttcaggatcgaaat
ccatttgaccttaatttgtggcatcaaattcgtgagaattacgaagcaatactttttgaa
gatcatgccttttccgagcagcacaacattgaacttatactgtggcagctgcattacaaa
cggattgaaaattgtagaggacacatcaatgctttcttgagttctagtagctcgagcgcg
gcacacaatgttaagggtccttctagactcgatcaacttgcaaaactgaagctgcagttc
aggacattactttcagaagcaactgggttttaccatgatttgatctcaaaaattagatcc
aagtatggccttcccttgggttatttttctgaggatcaagcgagtcaaaacatggctgat
aaagatggaaagaagttagcagaagttaaaaaaggcttggtatcttgtcatcgttgctta
atataccttggtgatctggctcggtataaaggattgtatggggagggggattccaagaac
agagagtatgctgctgcttcaagttactatttgcaagcagcttctctatggccaggcagt
ggaaacccacatcatcagcttgctatcattgcttcttattcgtcggatgagtttgcatta
acatatcgttacttccggagtttggctgtggagagtcctttcccaactgcccgtgataac
ttgattgttgcttttgaaaagaatcgtcagatttatgcccaattgtttgtggcttccaaa
gacacatctaagaagccgattggtaaaggaagaggtaaaggaagaggtaaaggtgaagat
acttcatcgaaagatgcgaacttggtagctggtcctgagaaggataaagtaactagtgca
aaggacatgctgaaagcattctgcattagatttgttcgtctcaacgggatactttttacc
cgaacaagcctggagacgttcttagatgtgcttacctctactagcagcagtttacgagag
gtaatttcttctggctcaatggaagagctgagtttgggaatagacaccagtgacagcgca
cttttcattgtcagactcgtggcaatcatgatatttagcgtccataactcaaagaaagag
acggaaggtcagtcgtatgcagaaattgtacagcgtgtggagcctgccagaaactcttta
acagctagttttgagttgcttggacatatagtagagcagtgtgtgcaactgcgtgatcct
tcagcaagttacttccttccaggggtcttagtttttgttgaatggttggcctgctgtcct
gacattgctctaggaagtgatccggacgacagacaaactactgtaagaaatagattttgg
aaccagtgtgttaccttcttcaatcagatcttgtctcttggacctctgtttattgatgat
gttgaagacgagacttgcttttcaaacatgagcttgtatgatgagagagaaactgaaaat
cgacttgcactatgggaggactatgaactaagaggatttttgccactgcttccagctcag
actattctcgacttctcacggaaacattcctttggaactgaaggtcccaaggaaaagaaa
gctcgtataaagaggatcctagcagcaggaaaagctttgaccagtgtgatcaaagttgat
caaaatcatgtgtattatgattctaagaagaagaagtttcttgttggtgtaaaaccgtca
gatgacttgctggattctcattcaagcccacctaaagctgatgctttgcaagataaccaa
gtaatggtgaagcataactcaccagtgatgcagcaagatcaacagatttgtatgggtgag
gaggatgatgatgaagtaattgttttcaagcctctagttactgaaaagaggaaagaggct
tctgaccaaatatatgtttctaatggaggctttaggaaacctgatcaagttgccactacg
gagaacttaaaacctttgagtggtgtggattcagcttttcatgaaaatcaatttctgcaa
gctagaggtaatgcgagtattcaagtgcctgcatctattggttccaaccttttgggactc
cttcaggcgtcaacccagtctcaggcttcgcatttgcaacaagttcagacacaggcagtg
aatcctcagtcagcccaatccttagctgctgcacgacttcagccaattcaatcacaggtc
gcacaacttcaaccactgccatcacgggttgtgcactttcaacaaactcaagctccgctt
tcacatgtttcattggtccagtcacaatctgcttctcttggtggtggtaccaagtggtta
ccagaagaagctgcttctcttgctagtagccaatctagttttgctcagatgggtaatggt
catgtgatgagaaatgagatacaaggaaatcatggggtttcctatcaccctgcacactca
ttaccggtctaccagtcctacaatgtcaatggtatgggtggtatgccatctcagtcacga
acttctgaagctgtgtttccacccaaaagtgatactgtttcgtcatctggagttattgct
gatggtctgggcgtccaatcttcaatagcaagaaaaaatccaatcagtagagcctttagg
catcttggccctccgcctgggtttaacactgtcccctctaagctgcagaaggagccagta
cctggttctgacttgtctggcaacaatctagcggttgatgattacagatggttggatgga
tacgaaactcaatcttctcgaggcgctggactcaacagttctttgaattatgcttctaaa
tcggaacaaatgggtaccagcaatggaatgaacggggctgctaatttcccgttccctggg
aaacaaattccaacatcacaggtccaagcagatcttccttattttcagaaccctcagaaa
gacagctttgtgaaccaaaatcatcaatcagcccaactccctgagcaatatcaaggacag
tcgacttggtcgagtcgtcactttgtgtga
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integrated database retrieval system