Camelina sativa (false flax): 109124546
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Entry
109124546 CDS
T05044
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat04120
Ubiquitin mediated proteolysis
csat04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
109124546
04120 Ubiquitin mediated proteolysis
109124546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csat04121
]
109124546
Enzymes [BR:
csat01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109124546
Ubiquitin system [BR:
csat04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109124546
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_Vps41
zf-RING_5
zf-RING_11
Prok-RING_4
zf-HC5HC2H
zf_RING_Vps8
zf-RING-like
FAR1_N
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
109124546
NCBI-ProteinID:
XP_010511389
UniProt:
A0ABM1RRC5
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All DBs
Position
5
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AA seq
459 aa
AA seq
DB search
MIQLKVYAGVSSLASLAVIYHAFSTRGQFYPAAVYLSTSKINLVVLLNMGLVLMFSLWNL
VKIVFLGSLREAEVERLNEQAWRELMEILFAVTIFRQDFSVGFISLVVTLLLIKGLHWMA
QKRVEYIETTPSVTLLSHVRIVSFMVFLLLLDGLLTYTSMRQLIQSRKASMSVFFTFEYM
ILATTTLSIIVKYAFYVTDMLKEGQWEGKPVYTFYLELVRDLLHLSMYLCFFLMIFMNYG
LPLHLIRELYETFRNFKIRVTDYLRYRKITSNMNDRFPDATPEELSSNDATCIICREEMT
SAKKLVCGHLFHVHCLRSWLERQNTCPTCRALVVPAESATSAASGNRGPHQQSLQQGIGS
SSSDGQGSSVATAASENMSSHEARLQAAASAASMYGRSVVYPSSANTLVWSQGYSLLPVE
AQRKFLESQIEVLQNQLGILEKRATVVDKKGKSVAETAE
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgattcagctaaaggtttacgcaggagttagtagcctcgcgtcattggctgtgatttac
catgctttcagtaccagaggtcaattttacccagcggctgtgtatctatcgacgtccaag
atcaatttggtggttcttttgaacatgggtttggttctaatgttcagtttatggaatctt
gtcaaaattgtgtttctgggttctcttagagaagctgaggttgagcgtttgaatgagcaa
gcgtggagagaactcatggagattctctttgctgtcactatttttcgacaggacttctct
gttggttttatctctttggttgtgactcttttgttgatcaagggtttgcattggatggct
cagaagagagtcgagtatattgagactactccttctgttactttactctctcatgttcgt
attgtttccttcatggtgtttcttctgcttttagatggcctccttacgtatacttctatg
cggcaattgattcagtcccggaaagcttctatgtctgtcttcttcacgtttgagtatatg
attcttgcaacaacaactctttctattattgtaaagtatgccttctatgtcacggatatg
ctcaaggaaggtcaatgggaaggaaaaccagtatatactttctatctggagctcgtccgt
gacttgcttcacttgtccatgtatctctgcttcttcctcatgatattcatgaactatggc
cttcctttgcatctaataagagagctctacgaaacgttcagaaacttcaagattcgtgtg
actgattacctccgatatcgtaaaatcacttccaatatgaatgatcggtttcctgatgca
actcctgaagaacttagctcaaatgatgccacttgtatcatatgtcgtgaagaaatgacc
tcagcgaagaaattagtatgtggccatctatttcatgtgcattgtcttcggtcatggttg
gaacgacaaaacacatgtcccacctgcagagcgctggttgtgccagctgagagtgctaca
tcagcagcttctggaaaccgtggaccacaccaacaatccctgcagcagggaatcggtagt
tccagttcagatggccagggatcttcagtagctactgctgccagtgagaatatgagcagc
cacgaagctaggttgcaagctgctgcttctgcagcctccatgtatgggagatccgttgtt
tatccatcttctgcaaacacactagtatggtctcaaggttattcattgcttcctgtagaa
gcacagaggaaatttcttgagtcccaaatagaggtgttgcaaaaccaacttgggattctg
gagaagcgggcaactgtagtagataagaaaggaaagtcagttgcggaaactgcagaatga
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