Camelina sativa (false flax): 109124591
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Entry
109124591 CDS
T05044
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 2 isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
csat04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109124591
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109124591
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
109124591
04121 Ubiquitin system [BR:
csat04121
]
109124591
03400 DNA repair and recombination proteins [BR:
csat03400
]
109124591
Enzymes [BR:
csat01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109124591
Spliceosome [BR:
csat03041
]
Complex B
Other components
Prp19 complex
109124591
Complex C
Prp19-CDC5 complex
109124591
Ubiquitin system [BR:
csat04121
]
Ubiquitin ligases (E3)
U-box type E3
109124591
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
109124591
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_EIPR1
PEP5_VPS11_N
WDR90_beta-prop_4th
PROPPIN
Beta-prop_DCAF12
Beta-prop_SPT8
NBCH_WD40
U-box
Beta-prop_DCAF4
eIF2A
WD40_like
zf-Nse
PUMA_CC
PAS_11
Motif
Other DBs
NCBI-GeneID:
109124591
NCBI-ProteinID:
XP_010509903
LinkDB
All DBs
Position
5:8787611..8792691
Genome browser
AA seq
527 aa
AA seq
DB search
MNCAISGEVPAEPVVSTKSGLLFERRLIERHISDYGKCPVTGEPLTIDDIVPIKTGEIIK
PKTLQTASIPGMLGTFQNEWDGLMLSNYALEQQLHTARQELSHALYQHDSACRVIARLKK
ERDEARQLLAEVERHIPAAPEAVTANATLSNGKRAAGDEDLGSDAKKLCPGISAEIITEL
TDCNAALSQKRKKRQIPQTLASIDALEKFTQLSSHPLHKTNKPGICSMDILHSKDVIATG
GVDATAVLFDRPSGKILSTLTGHSKKVTSVKFVGDADLVLTASADKTVRIWRDSGDGNYA
CGQTLNDHSAEVQAVTVHPTNKYFVSASLDSTWCFYDLSSGSCLSKVSESDNSQKVGYTA
AAFHPDGLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAAEDGV
RLWDLRKLRNFKSFLSADANSVEFDPSGSYLGIAASDIRVYQTASVKAEWNLIKTLPDLS
GTGKATCVKFGSDAQYVAVGSMDHNLRIFGLPGNEKANADDDSAQDQ
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgaactgtgcaatttccggagaagttcccgcggagccagtggtttcgacgaagtctggt
ttgctcttcgagagacgattaatcgaaaggcatatatcggattatgggaagtgcccggtt
actggtgaacctcttaccattgatgacattgttcccatcaaaactggggagatcataaag
ccgaaaacattgcagacagctagcatccctggaatgctcggaacgtttcagaatgaatgg
gacggtttgatgctatcaaattatgcgctggaacaacaactacatactgcaaggcaagag
ctaagtcatgccttgtatcagcatgattctgcctgtcgtgtgattgctagacttaagaaa
gaaagagacgaagcacgccaattgcttgcagaagttgaaagacatatacctgcggcccct
gaagctgtgacagctaatgctactctaagtaatggtaaacgagctgcaggtgatgaagac
ctgggttctgatgcgaagaaattgtgtcctggaatttcagctgaaatcatcacggaattg
actgattgtaatgctgctctttctcagaagcgcaaaaagcgacagattcctcaaacattg
gcttcaatagatgctttggagaagttcacgcagctatcaagccacccacttcacaagacc
aacaaaccaggcatttgttcgatggacattctacattctaaggatgtcattgctactgga
ggagttgatgcaactgctgttctctttgatcgtccttctggaaaaatcctgtcaacactg
actggtcactcgaagaaggttacaagcgtaaaatttgttggtgacgctgatcttgttttg
actgcttctgctgacaagacagtccgtatctggcgggattctggggatggaaattatgct
tgtgggcaaacgttgaatgatcactctgcagaggttcaagctgtaactgtgcaccccaca
aataaatactttgtgtcggcatcccttgatagtacatggtgcttctacgatctgtcctct
ggctcatgcctttcaaaggtatcagaatcggataattcacagaaggtgggttacacggct
gctgcattccatcccgatggtctcattctcggaactggtacatctcagtctgttgttaag
atttgggatgttaaaagtcaggcgaatgttgctaagtttgatggacacaccggggaagtt
acggctatatctttctctgaaaatggttatttcctcgcgactgctgcggaggatggtgtg
aggttgtgggacctgcgcaagttgaggaacttcaaatcatttttatcggcagatgcaaac
tctgtggagtttgaccctagcggatcttatctcggtattgctgcatcagatatcagagtg
taccagacggcaagtgtgaaagcagaatggaaccttatcaagacactcccagatctctcc
ggcactggtaaagctacgtgtgtgaagtttggttcagatgcacaatacgttgcagttggt
tcgatggaccataacctacggatatttggtcttcctggtaacgaaaaagccaatgccgat
gacgattctgcgcaagaccagtga
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