Camelina sativa (false flax): 109124754
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Entry
109124754 CDS
T05044
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109124754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
109124754
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109124754
Spliceosome [BR:
csat03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
109124754
Complex B
109124754
Complex C
U2 SnRNP specific factors
109124754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
UBA_HOIP
Motif
Other DBs
NCBI-GeneID:
109124754
NCBI-ProteinID:
XP_010518432
LinkDB
All DBs
Position
6:complement(26067603..26070659)
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AA seq
764 aa
AA seq
DB search
MSNRKFGIEKFGINRQTTYSFERSEAPQRFYVPPSSRGGDNSEDADLDNIDYIENEEAEE
DVEEGGSAAANGGEDDEIDPLDAFMEGIHQEMKAAPPPKPKEKLERYKDDEDDDHIESFL
KAKKDLGLTLAADALNAGYNSDEEVYAAAKAVDAGMLEYDSDDNPIVVDKRKIEPIPALD
HSSIDYEPINKDFYEEAESISGMSEQETSDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQI
MSAIKKQAYEKPTTIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQKD
EGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATP
GRLIDMLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWK
VEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEKLPGMIDEGDVLVF
ASKKATVDEVEAQLTRNSFKVAALHGDKDQASRMETLQKFKSGIYHVLIATDVAARGLDI
KSLKTVVNYDIAKDMDMHVHRIGRTGRAGDKDGVAYTLVTQREARFAGELVNSLVAAGQN
VPPELMDLAMKDGRFKSKREGRKGGGKKGRGGRGGGGNRGVRGVDFGLGIGFSSEPSGAS
SFKAASSRSGVINSVRTGVMAQFKNSFVAATPSNPQNQGYPNKRPSLMGFVSGGTIGGDM
GRTQSQPPQVAPTHNASLHNSSQEHSQSSENRPRERKRRSGWDN
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatcggaagtttggaattgaaaaattcggcataaatcggcaaactacctacagt
ttcgagcgatctgaagcaccgcaacgtttctacgtccctccgtcgtctcgcggcggagac
aactccgaggatgccgatctagataacattgattacatagaaaacgaagaagctgaggaa
gacgtcgaggaaggcggttctgcggcggctaacggtggcgaggatgatgagatcgatccg
ttggatgcttttatggagggaattcaccaggagatgaaagctgctccacctcctaagcca
aaggagaaactagagaggtacaaggacgacgaggatgacgatcatattgagagtttcctc
aaggcgaagaaagatttaggccttacactagccgcagacgcgcttaacgctggttataac
tctgacgaggaggtgtatgctgcagccaaggccgttgatgcagggatgctcgagtatgat
tccgatgataaccccattgtcgtggataaaaggaagattgagccgattccagctctggat
catagctccattgattacgaaccgattaataaggacttctacgaggaggcggaatctata
tcgggaatgagtgagcaagaaacttcagattaccgtcagcggttggggattcgtgtgtcg
ggttttgatgttcatcggccagttaagacctttgaggattgtggattttcctcacagatc
atgagtgctatcaaaaagcaagcttatgaaaagcctacaacaatccaatgtcaggctttg
cccattgtgctatctggtcgagatgttattggcatagccaaaactggttcaggaaagacc
gcagcatttgttcttcccatgattgttcatattatggatcagcccgaacttcagaaagac
gaaggtcctattggtgtcatatgtgctccaactagagaactggctcatcagatattcttg
gaagctaagaaattttcaaaagcatatggtctacgggtctctgcggtttacggtggaatg
tctaaacatgagcagtttaaggagctcaaggcaggatgcgagattgttgttgctactccg
ggaaggttgatagacatgctgaagatgaaggctttgacaatgatgagagccacttatttg
gttcttgatgaggcagatcggatgtttgacctcggttttgagccacaagtaaggtctatc
gttggccagattcgtcctgatcgccagactttactgttttcagccactatgccttggaaa
gttgaaaaattagctagggaaatcctctcagatcctattagagtcacagttggtgaagtg
gggatggccaatgaagatattacgcaagttgtcaatgtaataccctctgatgctgaaaag
cttccctggctacttgagaagctccctggaatgattgatgagggtgacgtattagtgttc
gcttctaaaaaggccactgttgatgaggtcgaagctcagcttactcgaaattcttttaaa
gttgctgctcttcacggtgataaagatcaggcatcgcgaatggaaactttacagaagttc
aaatctggaatctaccatgtgctgattgccactgatgttgctgcccgaggtctagacatt
aagtcactcaagaccgtggttaattatgacattgcaaaagatatggacatgcatgtacat
cgtattggtagaacaggccgggctggtgataaggatggggttgcatatacacttgttacg
cagagagaagctagatttgcgggtgaattggtaaacagtttggttgctgctggtcagaat
gtacctccagaactcatggatctcgccatgaaggatggacgattcaaatccaaacgtgaa
gggagaaaaggaggtgggaagaaaggacgaggcggtagaggaggaggtggaaacagaggg
gtacgtggtgttgattttggtcttggtattggatttagctcggaaccaagtggggcatca
tcttttaaagctgcgtcgagtagaagcggggtgatcaattccgtgagaactggagtaatg
gcccaattcaagaatagctttgtagccgcaacgccatccaacccacaaaaccaaggttat
ccaaacaagagaccatccctaatggggtttgtctcaggtggtaccattggtggggacatg
ggtagaactcagagtcaacctccccaagtagcacctactcataacgcctcattacataac
tccagccaggaacattcacagagttcggagaatcggcctagagagaggaagagaagatct
ggttgggataattga
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