Camelina sativa (false flax): 109124840
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Entry
109124840 CDS
T05044
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109124840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
109124840
03012 Translation factors [BR:
csat03012
]
109124840
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109124840
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109124840
Translation factors [BR:
csat03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109124840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
ATPase
AAA_16
T2SSE
PhoH
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
109124840
NCBI-ProteinID:
XP_010479291
LinkDB
All DBs
Position
17:complement(27904765..27912102)
Genome browser
AA seq
1198 aa
AA seq
DB search
MPYYSAIFRGHIKPNAVVGAASMFIQHNSVQLHRTPKLLLRPSSVVRSLHCRRSGGLVTH
SQRSRVLSVKAGRGDASSSTLGVEWRAANLPYFQRQNSSYGRIAYNDYESSDESDRDVGS
SQSQQMAGSTLDNIDQWRFKLTMLLRNKEDQEVVSRERKDRRDFDHISAMATRMGLHSRQ
YSKIVVISKSPLPNYRPDLDDKRPQREVVLPFGLQSEVDAHLHAFLDQKKTLIPEMPRPN
SNDSLSSDYGKYENPETVMQNSLARERILRPRSLQLRSKQQQWVDSPEGQKMVDFRKTLP
AYKEKDALMKAIAANQVVVVSGETGCGKTTQLPQYILESEIEAARGASCSIICTQPRRIS
AISVSERVAAERGEQIGESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLVDRSLKGVTHV
VVDEIHERGMNEDFLLIVLKDLLPRRPDLKLILMSATLNAELFSSYFGGAPAMHIPGFTY
PVRAHFLEDFLEKTGYRLTAYNQIDDYGEEKTWKMQKQAQFKKRKSPISSAVEDALEAAD
FKGYNFRTRDSLSCWSPDSIGFNLIENVLCHIVKGERPGAVLVFMTGWDDINSLKNQLEA
HSLLGDTNKVLLLACHGSMASSEQRLIFDRPPEGIRKIVLATNMAETSITINDVVYVIDC
GKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVMPGECYHLYPRCVYDAFADYQQP
ELLRTPLQSLCLQIKSLRLGSISEFLSRALQPPEALSVQNAVEYLKIIGALDDDENLTAL
GKNLSVLPVEPKLGKMLILGAIFNCLDPVMTVVAGLSVRDPFLMPFDKKDLAETARSKFS
GRDYSDHLTLVRAYNGWKAAERTQSGYEYCWKNFLSSQTLKAMDSMRKQFFNLLKEASLI
DNIEGCSKLSHDDHLVRSIICAGLFPGICSVVNKEKSITLKTMEDGQVLLYSSSVNGNVP
MIPFPWLVFNDKVKVNSVFLRDSTAVSDSVLLLFGDKISSGGFDGHLKMLGGYLEFFMKP
TLAYTYLSLKRELDELIQNKLVNPKLDIQPYDKLMTAIRLLVSEDQCEGRFVYGRKALSP
TPTKKLKEVGTQLQNSGGENNKNQLQTLLARAGHGTPVYKTRQLKNNQFRAMVTFNGLDF
MGKPCGSKKNAEKDAAHEALLWLQGESKSSLNDLNHMSMLLKKNKSKKPARASSAKWG
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgccttactactctgcaattttccgaggacatatcaaacctaacgccgtcgtcggtgct
gcctccatgtttattcaacacaactccgtccagcttcaccggacccctaaattgttgtta
agaccttcatctgtggttaggtctcttcactgtcggaggtcaggtgggttggttacgcat
tctcagaggtcgagggtcttgtctgtgaaagcaggtcgtggtgatgcttcttcttcgact
cttggagtagagtggagagcagctaatttaccgtacttccagaggcaaaactctagctat
ggacgtattgcttacaatgactatgaatcaagcgatgagtcggacagagatgttgggtct
tctcagtctcagcaaatggcgggttcgactcttgataacattgatcaatggagatttaaa
ctaactatgcttctccggaacaaagaagaccaagaagttgtgtcaagggagagaaaagat
cggcgtgattttgaccatatctcagctatggcaactagaatgggattacacagccgtcag
tattcgaagattgttgtcattagcaaatctcctttgccaaattatagacctgaccttgat
gataaacgtccacaaagagaggtggtcttgccttttggtctacaaagcgaagtagatgcc
catctgcatgctttcctcgatcagaaaaaaacattgattccagagatgcctaggccaaat
agtaatgatagtttgtcatccgattatggaaaatatgagaacccagagacagtgatgcaa
aatagtcttgcaagggaaagaatactccgtccgagaagcttacaactgaggagcaagcaa
cagcaatgggtggattctccagaaggccagaaaatggtagactttcgcaaaacccttcct
gcttacaaagagaaagatgcactaatgaaagctattgcagcaaaccaggtcgtagtggtt
tctggagaaactggatgtggtaaaacaactcaacttccccagtacatattagaatctgag
atcgaggctgcccgtggagcttcatgcagcatcatatgtacccagcctagaagaatatct
gctatctctgtttctgaacgagttgctgcagaacgtggagaacaaataggagaatctgtt
ggctacaaagtgcggcttgaaggaatgagagggagagatacacgtcttcttttttgtaca
actggtgttttacttagaaggttacttgtggatcgtagtctgaagggtgtgactcatgtt
gtagttgatgagattcatgaacgtgggatgaatgaagattttctgcttatcgtgctgaaa
gatctcttacctcgtcgacctgacctaaagctaatcttgatgagtgctactttgaacgcc
gagctcttttcttcttattttggtggtgcaccagccatgcatatcccaggttttacatac
cctgtccgagcccatttcttggaggatttccttgagaagactgggtacaggctgacagca
tataatcaaattgacgattatggtgaggaaaagacatggaagatgcagaaacaagctcaa
ttcaaaaaaagaaaatccccgatatcttctgctgttgaggatgctcttgaagctgcagac
ttcaaaggatacaactttcgtactagagattctttgtcatgctggagtcctgattcaata
ggctttaacctcattgagaatgtgctttgtcacatcgttaaaggagagagacctggtgct
gttttggtattcatgaccggttgggatgatataaactccttaaagaatcagctcgaagct
cattctcttctaggagatacgaacaaagttttgttgcttgcctgtcatggatccatggcc
agctctgagcagaggctgatttttgatagacctccagaaggaattaggaaaatagtgctg
gccaccaatatggctgagacaagtatcaccatcaatgatgtcgtatatgtcattgattgt
ggtaaagcaaaagagacgtcttatgatgcccttaacaataccccttgtctgcttccatct
tggatttcgaaggctgctgctcgccaaagaagaggtagagctggtcgtgttatgcctgga
gaatgttatcacctctatcctagatgtgtctatgatgcttttgctgactaccagcagccg
gaactccttaggacacctttgcagtctttatgtctacaaattaaaagcttaagacttgga
agcatttcagagttcctgtccagggcgttgcaacctcctgaagcattatctgtccaaaat
gctgttgagtatctaaagatcattggggctcttgatgacgatgaaaatttaacagcttta
gggaaaaatctgtctgtgcttccggtggagcctaaactcggaaaaatgcttattttaggg
gctatcttcaactgtctagatccagtaatgaccgttgtcgctggtctaagtgtcagagac
ccattccttatgccatttgacaaaaaagatctggcagaaacagcaaggtccaagttctct
ggccgtgattacagtgatcatttgacactagttcgagcatacaatggttggaaagctgct
gaaagaacacagtctgggtacgagtactgctggaagaactttctctcttctcaaactctt
aaggccatggactctatgcggaaacaatttttcaatctcctcaaggaggcttctctgatt
gataacatagaaggttgcagtaagctgagtcatgatgatcatcttgtccgctcaatcatt
tgtgctggcctgttccctggaatttgttctgttgttaataaggaaaagtcaatcacgctc
aagacaatggaagatggacaagtgcttctatactcaagttctgtgaatggcaatgtacca
atgattcccttcccttggctagtcttcaacgacaaagtgaaagtcaattctgtgttcctg
cgagactctactgctgtatctgactctgtgcttcttttgtttggagataaaatatcttcc
ggtggatttgatggtcatctcaaaatgcttggaggatatctagagtttttcatgaaacct
actttagcatatacatacctatcgttaaaaagagagctcgacgaacttattcagaataag
cttgtgaatccaaaacttgatattcaaccatacgacaaacttatgactgccattagatta
cttgtgtcggaggaccaatgtgagggaagattcgtctatggccggaaagctctaagccct
acaccgacaaagaagttaaaagaagtagggactcagctgcagaacagcggtggtgaaaac
aacaagaaccaacttcagacattgcttgcccgagcaggacacggaacacctgtgtacaag
acaagacagcttaagaacaaccagttccgcgctatggttaccttcaatggattggatttc
atgggaaagccatgtggtagtaagaaaaatgcggagaaggatgcagctcatgaagctttg
ttgtggttacaaggcgagtccaagtcgagtctgaatgatcttaaccacatgtcaatgctg
ttaaagaagaacaaaagtaaaaaacccgcaagggcatcatcagctaaatggggttaa
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