Capilliphycus salinus: ACL6C3_05775
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Entry
ACL6C3_05775 CDS
T10919
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
csau Capilliphycus salinus
Pathway
csau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACL6C3_05775 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csau03400
]
ACL6C3_05775 (mfd)
Enzymes [BR:
csau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACL6C3_05775 (mfd)
DNA repair and recombination proteins [BR:
csau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACL6C3_05775 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
XNO71511
LinkDB
All DBs
Position
complement(1406373..1409831)
Genome browser
AA seq
1152 aa
AA seq
DB search
MTFSAIVRATARSPLTRELLTKLNQHQSLYLNGVPRLPKGLVASALAQEAGLNLFVVTAT
LEEAGRWSAQLEAMGWSVVHFYPTSEGSPYDPSFSEEMTWGQMQVLADLINPDAREKTAD
KKAADNGKIAVVATERSLQPHLPPVEDFKPYCLTLKQGMSQDSKQLDEQLATLGYERVSL
VETEGQWSRRGDIVDIFPVAAELPVRLEWFGDELERIREFDPTTQRSLDKITQLVLTPTD
FTPWGIGTENWKIDKPASLLDYLPELTLVAVDEPDQCAAHGDRWYDHIEQSLSDIPASDN
FPKLHQPFSESLADISAHFDRLYLSELAEVNPSPLVAGSPSLNLSSRPLPITPHQYAKLS
DLIRQERNRHFAIFLVSAQPSRSVALLSEHDCPAKFVPNPRDYPAIDGLIKDTPVALKYS
GLAELEGFILPTFRLVVITDREFYGQHSLATPSYIRKRRRAASKQVDPNKLRPGDYVVHR
QHGIGKFIKLESLTLNNETRDYLVVQYADGLLRVAADQVGTLSRFRSTGAKVPQLNKLSG
KTWEKTKNKVQKAIKKLAVDLLKLYAQRAQQTGYNYPEDTPWQQELEDSFPYQPTPDQLK
STQDVKRDMEAERPMDRLVCGDVGFGKTEVAIRAIFKAVTAGKQVAFLAPTTILTQQHYH
TLKERFAPYPIEIALLNRFRTAGEKREIQKRLTTGEIDIIVGTHSILSKTIQFKDLGLLV
VDEEQRFGVNQKEKIKTLKTHVDVLTLTATPIPRTLYMALSGIREMSLITTPPPSRRPIK
THLSPYNDETIRTAIRQELDRGGQVFYVVPRIEGIEEKSAKIREMVPTARIAIAHGQMDA
AELESIMLTFNAGEAEILVCTTIIESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGRSG
VQAHAWLFYPVNADGQAMLSDDARKRLRAIQEFTQLGSGYQLAMRDLEIRGAGDILGSEQ
SGQMDVIGFDLYTEMLEESIREIKGQEIPQVDDTQIDLNLTAFIPSDYIPDIDQKMSAYR
EVASCNSRDELVRLEEDWCDRYGPIPTPAQQLIRVMELKQIAKKLGFSRIKPDTENKQHI
ILETPMEEPAWNLLKEKLPGHLHSRFVYSKGKVTVRGLGAMNAGKQLESLIEWLDQMQDV
LSEKKEEVFQVS
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgacattttctgcgattgttcgggcgactgcgcgatcgccgctgacccgcgaactcctg
accaaactaaatcaacatcaatcactttaccttaacggtgtcccccgcttaccgaaagga
ttggtcgcctccgccctggcccaagaagccggactgaatttgtttgttgtgaccgccacc
ctcgaagaagccggacgctggtcagcccaactcgaagcgatggggtggtctgtggttcat
ttttatccgacgtcggagggttcgccctatgacccgtctttctcggaggaaatgacttgg
ggacaaatgcaggttcttgcagatttgatcaaccccgacgcccgagaaaaaaccgcagac
aaaaaagccgcagacaatggtaaaattgcggtggtcgccaccgagcgatcgctacagccc
caccttccccccgttgaggattttaagccctactgtctgaccctcaaacaggggatgagt
caggactccaaacaactcgatgaacaactcgcgactctcggttacgaacgggtttcgctg
gtggaaaccgaaggtcagtggagtcgtcggggcgatattgtcgatatttttcccgtcgcg
gctgaacttcccgtccgtttggagtggtttggggacgaactggaacgaattcgcgaattt
gaccccacaacccagcgatcgcttgataaaataactcagttggttctcacgcccaccgat
tttaccccttggggaattggtacggaaaactggaaaattgacaaacccgcctcattactc
gattatttgcccgaactgactttagttgccgtcgatgaacccgatcagtgtgcggcgcac
ggcgatcgctggtacgatcatattgaacagagtttatcggatattcccgcctcagacaac
tttcccaaactccaccaaccgtttagcgaatctttggccgatatttccgcccatttcgat
cgcctctacctctcggaactcgcggaagtgaacccctctcccctggttgccggttcgccc
agtctcaacctgtcgagtcgtcccctcccgatcacgccccatcagtacgccaaactctcc
gatctgattcgccaagaacgaaatcgccattttgcgatctttctcgtttccgcccaaccc
agtcgatccgtcgccctgctgtccgaacacgactgtccggcgaaattcgtccccaacccc
cgagactatccggcgatcgacggtttgatcaaagatacccccgtcgccctcaaatatagc
ggactcgcggaactcgaaggttttattttaccaacatttcggttagttgtcattaccgac
cgagaattttatggtcaacattccctggcgacccccagttacatccgcaagcggcgccgg
gcggcgtccaaacaagttgacccaaataaactccgtccgggggattatgtcgttcaccgt
cagcatggaattggtaaatttattaagttagaaagtctcacccttaataacgaaactcgc
gattatttggtcgttcaatatgccgatgggttgttgagagttgcagccgatcaggtggga
acgttatcccggtttagaagtacgggcgctaaagttccccaactcaataaactttccggt
aaaacctgggagaaaaccaaaaataaagttcaaaaagcgattaaaaagttggcggttgat
ttgctgaaactttacgcccaacgcgcccaacaaaccggttataattatcctgaagatacg
ccctggcaacaggaacttgaagattcttttccctatcaaccgacgcccgatcagttgaaa
tcaacccaagacgttaaacgggatatggaagccgaacgtccgatggatcgtttagtttgt
ggggatgtcgggtttgggaaaacggaagtggcaattcgggcaatttttaaagcggtcact
gcgggaaaacaggtggcttttctcgccccaactacgattttaacccaacagcattatcac
acgctaaaagaacgatttgcgccctatccgatagaaattgcgttgttaaatcgtttccga
accgcaggcgaaaaaagagagattcaaaaacggttaacaacgggcgaaattgatattatt
gtcggcacccattccattctcagcaaaaccattcaattcaaagatttaggattattagtt
gtagacgaagaacaacgctttggagtcaatcaaaaggaaaaaattaaaaccctaaaaact
cacgtagatgttttaactttaactgcgactcctattcctcgcacgttatatatggcgttg
tcgggaatccgagaaatgagtttaattaccacgccaccgccttcccgtcgcccgattaaa
actcatttatcgccctacaatgatgaaaccattcgcacggcgatccgtcaagaattggat
cggggcggacaggttttttatgtcgttcctcgaatagaaggaattgaggaaaaatcggct
aaaatacgcgaaatggtgccaacggcgaggatagcaattgctcacggtcaaatggatgcg
gcagaattggaatcaattatgttaacctttaatgcgggagaagcagagattttagtctgt
acaaccattatcgaatcggggttagatattcctcgggtaaataccattttaatcgaagat
gctcatcgctttggtttagcacaattgtatcagttaaggggtcgggttggacgttcggga
gtacaagcccatgcgtggttattttaccccgtaaatgcagacggacaggcgatgttatcc
gacgatgcccgcaagcggttgagggctattcaagagtttacacaattgggttctggttat
caactggcgatgagagatttagaaattcgcggcgccggtgatatactcggatcggaacaa
tccggtcaaatggatgtaatcggatttgatttgtatacggagatgttagaagaatcaatt
cgggaaatcaaaggtcaagaaatcccgcaagttgatgatacgcaaattgaccttaatctt
actgcttttattccctccgattatattcccgatatcgaccaaaagatgagcgcttatcga
gaagttgcttcttgtaatagtcgcgatgaactggtaagattagaagaagattggtgcgat
cgctacggcccgataccgacacccgcccaacagttaattcgggtgatggaactcaaacaa
attgccaaaaaattgggcttttctcgaattaaaccggataccgaaaataaacagcatatt
atcttagaaacgccgatggaagaaccggcttggaatttgttaaaagagaagcttccgggg
catttacattctcggtttgtttacagcaaaggtaaagttaccgttagaggtttgggggcg
atgaatgcgggtaaacagctagaatctttaatcgaatggttggatcaaatgcaggatgtt
ctcagcgagaagaaagaggaagtgtttcaagtgagttga
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