Capilliphycus salinus: ACL6C3_30080
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Entry
ACL6C3_30080 CDS
T10919
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
csau Capilliphycus salinus
Pathway
csau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACL6C3_30080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csau03019
]
ACL6C3_30080
03009 Ribosome biogenesis [BR:
csau03009
]
ACL6C3_30080
Enzymes [BR:
csau01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ACL6C3_30080
Messenger RNA biogenesis [BR:
csau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACL6C3_30080
Ribosome biogenesis [BR:
csau03009
]
Prokaryotic type
rRNA processing factors
ACL6C3_30080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DUF6863
Motif
Other DBs
NCBI-ProteinID:
XNO70164
LinkDB
All DBs
Position
complement(7396145..7398262)
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AA seq
705 aa
AA seq
DB search
MSKQIIIAEQHRIAAVFSEDQIQELVVATGSHQVGDIYLGVVENVLPGIDAAFVNIGDAE
RNGFIHVSDLGPLRLKKSSGSITELLAPQQKVLVQVMKEPTGTKGPRLTGNITLPGRYLV
LMPYGRGVNLSRRIRSETERNRLKALAILIKPSGMGLLVRTEAEGMAEDAILEDLESLQK
QWENIQQEASSTRPPALLNRDNDFIQRVLRDMYSGDVNRIVVDNPTGIKRVKQHLINWSV
GKAPQGVLIDHHRERIPVLEYFRVNAAIREALRPRVDLPSGGYIVIEPTEALTVIDVNSG
SFTRSATSRETVLWTNCEAATEIARQLRLRNIAGVIIVDFIDMDSRRDQLQVLEHFNKVL
KADKARPQIAQLSELGLVELTRKRQGQNIYELFGRPCQTCGGLGHLVHLPGELPEPEPAA
ESTVPERIVLTPRTSLSGGLPETVERLPEKTTPILEVSPQQRSEPETMELDPSSNLQDLE
LINHPSYQDLTTGTNARRRRRRRLDSLVHEDEPARNNLRLPTTGYNENRQELQLSEVVPA
RTGLAERGSRTSKSDTLKPATEPPEVISVEMTSDEQQMYAMMGISPLMLAHQSPKNSRNV
IVTVRLPGEEPPSPKDLLDDKEEGSMEVSPPSSSTPTPLDDESSLSFESEDPEESSDEFG
VEEFSGSPDGGISEDSEEGMDLDEDSEEDSSPKRRRRRRSSALSE
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacaaattatcattgccgaacagcatcgaatagcggctgttttctccgaagat
cagattcaagaactcgttgttgccaccggaagtcaccaagttggcgatatttatctcgga
gttgttgaaaatgtcttgcccggaattgatgccgcttttgttaatattggggatgcagaa
cgaaacggatttatccacgtttccgatctcggccctttacgactgaaaaaatcttccggt
tccatcaccgaattattagcaccccaacaaaaagttttggtgcaggtgatgaaagaaccc
accggaactaaaggcccgcgactgaccggaaatattaccttaccggggcggtatttagtt
ttaatgccctacggacggggcgtgaatttatcccggcggatacgctcggaaaccgaacga
aatcgcctcaaagccctggcaattttaattaaaccttcgggaatgggtttgctggtgcga
accgaagccgaaggaatggcagaagatgccattttagaagacttggaaagcttgcaaaaa
cagtgggaaaatattcagcaagaagccagttccacccgtcctcccgctttgctcaatcgc
gataacgactttattcaacgggtgttgcgcgatatgtacagcggcgatgttaatcggatt
gtggttgataatcccaccgggattaagcgcgtcaagcaacacctgattaactggagtgtt
ggtaaagcccctcagggggttttgatcgatcaccatcgagaacgaattccggttctagaa
tattttcgggtgaatgcggcaattcgcgaagccttgcgacctcgggtagatttgccctcg
ggcggttatattgtgattgagccaaccgaagccttaaccgtgattgatgttaactccggt
tcgtttacccggtcggccacttcccgagaaaccgtgttgtggaccaactgcgaagccgcc
accgaaatcgcccgtcagttgcgcctacgcaatatcgccggggtgattattgtcgatttt
atcgatatggattctcgccgcgatcagttgcaagtcctcgaacattttaacaaggttctc
aaagccgacaaagcccgaccccaaatcgcccaattgtccgagttgggattggttgagtta
acccgcaagcgtcagggacaaaatatctacgagttatttggtcgcccctgtcaaacttgt
ggcggtttgggtcatttggtacatcttcccggcgagttacccgaacccgaaccggccgca
gaaagcactgttcccgaacggattgttttaactccccgcaccagtttgtccggcggttta
cccgaaaccgtagaacggctaccggaaaaaacaacgccgattttagaggtctccccgcaa
caacgcagcgaaccggaaacgatggagctagatccttccagcaatttacaggatttagag
ctaattaaccatccgagttatcaagatctgaccaccggtactaacgctcgtcggcgtcgg
cgtcggcgtttagattctttggttcacgaagatgaacccgcccgcaataatttgcgcttg
ccaaccaccggatacaatgagaatcgtcaggaacttcagttatcggaagttgtacccgcc
cggaccggtttggcagagcgaggaagtcggacctcgaaatcggatactttgaagcccgcg
accgaacccccggaagtgatttctgttgaaatgacgagcgacgagcagcaaatgtatgcg
atgatgggcatttctcctttgatgcttgctcatcaaagtccgaaaaattctcgaaatgtg
attgttacggttcgtttacccggagaagaaccgccctcacccaaggatcttttagacgac
aaagaagaaggatcgatggaggtgagtccgccgagttcatcgactccgaccccgctcgac
gacgagtcaagcctgtcgtttgagtcggaggacccagaagagtcttccgatgagtttggg
gttgaggagttttctggaagtcctgacggggggatttcggaagattctgaagaagggatg
gatctcgacgaggattctgaagaagattcttctccgaaacgccgccgccgtcgccgttcc
tctgccctatcagaatag
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