Cannabis sativa (hemp): 115694915
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Entry
115694915 CDS
T08987
Name
(RefSeq) DNA mismatch repair protein PMS1 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03430
Mismatch repair
csav03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
115694915
03460 Fanconi anemia pathway
115694915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csav03400
]
115694915
DNA repair and recombination proteins [BR:
csav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
115694915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
115694915
NCBI-ProteinID:
XP_030477900
LinkDB
All DBs
Position
X:18480542..18488206
Genome browser
AA seq
913 aa
AA seq
DB search
MDASFLPSDSPTIKPINKASVHRICAGQVILDLSSAVKELVENSLDSGATSIEIALKEYG
KECFQVIDNGSGISPNNFKVIALKHHTSKLVDFPDLQSLATFGFRGEAISSLCSLGNLTI
ETRTENETVATHLTYDHAGLLVAEKKTARKIGTTVTVKNLFSNLPVRSKEFHRNIRKEYG
KLISLLNAYALIARRVRLVCTNTTGRNVKSVVLKTQGSDSLKDNIITLFGMGTFNCLEPL
DLCISDGCKVDGFLSKAGQGSGRNMGDRQFFFVNGRPVDMPKVTKLVNELYRGANSQQHP
IAILNFTIPSGACDVNVTPDKRKVFFSDEGSILHALREGLRQIYSSNHARFVVNKVEEPT
KAVNSPSCSSQQKSYTSLKPLSQDESGPEGENMDLVSEDDNQVKTLENEVQDIHDVERFN
CNIKMKDFTLRGHKIKESEDSKQFTIHDDSITTDQKVLPLPKTVDGGIATNKDSYRSSSV
QTLLNKFVTVNKRKHENISTVLSEMPVLRNQSHHGLAKNSNSDVKFAVPRSSVSPTLVDH
YLEAGEIESSKYLREDRATNKVANPLSSEGSTNGRESQEDIDAKEKGVPVANVSSNAASS
EDLSINVHEGVSVQTPLDSSNQLLVVSKCSSGLEICSTLQFSLQDLKNRRQRRLSLLHSS
KDNQRKKGKRCYAAATLELSQPVNEDRKAKDLVEATRELERLFRKEDFGRMKVIGQFNLG
FIIGKLDQDLFIVDQHAADEKYNFERFAQSTILNLQPLLRPLRLELSPEEEVVVSMHMDI
FRKNGFALEEDLDAPPGHHFRLKAVPFSKNITFGVEDVKDLISTLADGHGECSIIGSYRT
DTADSVCPSRVRAMLASRACRSSVMIGDALGRNEMQKILEHLVGLKSPWNCPHGRPTMRH
LVDLTTIYKSAEE
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgtcgttccttccttccgattccccgactataaagcccattaacaaggcttcg
gttcacagaatctgcgccggtcaagtcattctcgatctttcgtcggcggtcaaggagctc
gtcgaaaacagtttagactccggcgccaccagcattgagatcgctctaaaagagtatggc
aaagagtgcttccaggttatcgataatggctccggcatttcgcccaacaatttcaaagtc
attgcccttaagcatcacacatctaaattggttgatttccccgaccttcagtcgctggct
acgtttggttttcgcggcgaggccataagttccctgtgctcattggggaatttgaccatc
gaaaccagaacggaaaacgagacggttgcaacgcacttgacttacgaccatgcgggattg
ttggtggctgagaagaagacagcacggaaaattggaactactgttactgtcaagaatttg
ttctcgaatttacccgtccggagcaaagaatttcatagaaacataaggaaggagtacgga
aagcttatctccttgctgaatgcctatgctcttattgcgagaagggttcggttagtatgc
actaacacaacaggtagaaatgtaaagtccgtggtgcttaaaacacaaggaagtgattct
ctcaaagataacattatcacactttttggcatgggtaccttcaactgtttagagcctctg
gatttatgcatatcagatggttgcaaggttgacggtttcctgtccaaggcagggcaaggt
agtggacgcaatatgggagatagacaattcttttttgtaaatggtcgacctgtggacatg
cctaaagtcacaaagcttgtgaatgagttatatagaggtgccaactcccagcaacatccc
attgcaattttaaattttactattccatctggagcatgtgacgtcaatgttactccggat
aaaaggaaagtattcttttctgacgagggttccatattgcatgccctaagggagggttta
cggcagatttattcctctaaccatgctcgtttcgtagttaataaagttgaagagcctacc
aaggctgtaaattctccgtcatgttcttctcagcaaaaatcttacacatctttgaaacca
ttatctcaggatgagagtggtccagaaggtgaaaatatggaccttgtttcagaggatgat
aatcaagtcaaaactttggaaaacgaagttcaagacattcatgatgtagaaagattcaat
tgcaatattaaaatgaaggactttactcttagaggacacaaaattaaagaatcagaagac
agtaaacaattcactattcacgatgatagtatcacaactgatcaaaaagtgcttcctctt
ccgaaaactgttgatggtggcattgctacaaataaggattcatatcgttcaagctctgtt
caaacattacttaacaaatttgtcactgtaaataaaaggaagcatgaaaatatcagtaca
gtactatctgagatgcctgtcttgagaaatcagagtcatcatgggcttgccaaaaatagc
aattctgatgtgaaattcgcagttccaagatcctcagtaagccccaccctggttgatcat
tacttggaggcaggtgagatagaatcgtccaagtatttaagagaagacagggccaccaat
aaagtcgcaaatccactttcttctgaaggcagtacaaatggcagagaatctcaagaggat
attgatgctaaagagaaaggagttcccgttgctaatgtctcatcaaatgctgcatccagt
gaggatctctctattaatgtgcatgaaggtgtttctgttcaaactcctttagattcttct
aatcagctgttggttgtttcaaagtgttcttctggtcttgagatatgttccaccttgcaa
tttagtttgcaagacctaaagaacaggaggcagcggaggctgtctctattgcactctagt
aaagataatcaaagaaagaaggggaaaaggtgctatgctgctgccacactagagctttct
cagccagtaaatgaagatagaaaggcaaaagatttagttgaagctactagagagctggaa
agacttttcagaaaggaggattttggtaggatgaaggtaattggacaattcaaccttgga
ttcatcattgggaagttagatcaagatctatttattgtcgatcagcatgctgcggatgaa
aaatacaattttgagcgtttcgcacaatcgaccatcttaaacctgcagcctttgcttcgg
ccattaaggttggagttatctcctgaagaagaagtagttgtttccatgcacatggatatt
ttcaggaaaaatggatttgctttggaagaggatctagatgcaccgccagggcaccacttt
agactgaaagcggttcccttcagtaaaaacataacttttggagttgaagatgtgaaggac
cttatttcgactctggctgatggccatggggaatgctcaataattggtagttacaggacg
gacactgctgattctgtttgtccgtcacgagttcgtgctatgttggcatcacgtgcttgc
agatcgtctgtcatgattggggatgctcttggaaggaatgagatgcagaagatacttgag
catttggtagggctgaagtctccttggaattgtccacatggaaggcccacaatgcgccac
ttggtagatttgacaaccatatacaagagtgcagaagaatga
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