Cannabis sativa (hemp): 115696905
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Entry
115696905 CDS
T08987
Name
(RefSeq) 5'-3' exoribonuclease 3 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03008
Ribosome biogenesis in eukaryotes
csav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
115696905
09123 Folding, sorting and degradation
03018 RNA degradation
115696905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csav03021
]
115696905
03019 Messenger RNA biogenesis [BR:
csav03019
]
115696905
03009 Ribosome biogenesis [BR:
csav03009
]
115696905
03016 Transfer RNA biogenesis [BR:
csav03016
]
115696905
Transcription machinery [BR:
csav03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115696905
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
115696905
Ribosome biogenesis [BR:
csav03009
]
Eukaryotic type
Pre-60S particles
RNases
115696905
Transfer RNA biogenesis [BR:
csav03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
115696905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
115696905
NCBI-ProteinID:
XP_030479661
LinkDB
All DBs
Position
7:50187746..50196679
Genome browser
AA seq
1077 aa
AA seq
DB search
MGVPAFYRWLAEKFPLVVVDVIEEEPVVIDGISIPVDTSKPNPNGLEFDNLYLDMNGIIH
PCFHPEDRPSPTTFDEVFQCMFDYIDRLFVMVRPRKLLFMAIDGVAPRAKMNQQRSRRFR
AAKDATDAAAEEERLREEFEREGRKLPPKSESQVFDSNVITPGTEFMAVLSIALQYYVHL
RLNNDHGWKNVKVILSDANVPGEGEHKIMSYIRLQRNLPGHDPNTRHCLYGLDADLIMLG
LATHEIHFSILREIVFTPGQQDKCFMCGQMGHLAADCEGKAKRKAGEFDEKGDKSIVKKP
YQFLNIWTLREYLDYELRIPNPPFEIDLERIVDDFIFICFFVGNDFLPHMPTLEIREGAI
NLLLAVYKKEFRAMGGYLTDSCKPNLDRVEHFIQAIGSFEDKIFQKRARLHQRQADRIKR
EKGQLRRGDDAQPQVQPESLVPVSRFHGSRLASGSSPSPYQQSGSGYNSRNRQAMESSGK
GNSHAGKVARTSSAASIGAAIVEAENNLEEDEKENKEDLKAKLKEIIRGKSDAFNSENPE
EDKVKLGVPGWKERYYEEKFSAKTPEEREEIRKDVVLKYTEGLCWVMQYYYEGVSSWHWF
YPYHYAPFASDLKDLSQLSIKFELGSPFKPFNQLLGVFPAASSHALPEQYRKLMTDPNSP
IIDFYPTDFEVDMNGKRFSWQGIAKLPFIDESRLLSEVEKIEHTLTAEEVRRNSTMFDML
FVASSHPLSVSIYSLDNRCKQLSNRERAEFKEKIDPEIRAACSEGMNGYLSPCGGEPCPP
VFRSPVLGLEDIMDNQVICAIYRLPDPHKHITRPPAGVTFPKKIVSLGDLKPEPVLWHED
TGRRGPDNGRYNNHPGTTSGRQLGEAAHRLVSNSLQVKADYNGYGNHGRSPSYSGNHTRQ
NSYGTHLRFHDREHSDIHPPEGQYQSSNRSSHHHYNDRRWNSDGHISSGSRHPHNGSQSL
YYDRNNRMAPPHGFVGPHNVDPIYPNGPIAQTPPGFVGANPYPGGHNQYQNYQSAGAIGR
QQQWPADGGSGWNAPPQAGPYIARGYSQPHQSGNPYSALDRRANKREPPPAHGYRRN
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagctttttatcggtggttagcggagaagtttccgctagttgtggtcgat
gtcattgaagaagaaccagtcgtaatcgatgggatttccattccggttgacaccagtaag
cctaatcctaatggccttgaattcgataatctgtatctcgacatgaatggaattattcac
ccttgttttcaccccgaagataggccttccccaacaacctttgatgaggtctttcaatgc
atgtttgactacattgacaggctttttgtaatggtgcgtcctcgaaagcttctgttcatg
gctattgatggtgttgccccgagggcaaaaatgaatcaacaaagaagcagacgtttcaga
gctgcaaaagatgcaaccgatgcggcagctgaagaagaacgcctgcgtgaagagtttgaa
agggaggggagaaagcttcctcctaaatcagaatcacaagtttttgattctaatgttatc
actcctggaactgaatttatggctgtattgtcaattgcattgcagtactatgtccatctt
agattaaacaatgaccatggatggaaaaatgttaaggttattctttctgatgcaaatgtc
ccgggcgagggagaacataagataatgtcgtacattcgtcttcaaagaaatcttcctggg
catgatccaaatacacgtcattgcctgtatggtttggatgctgatctaattatgctgggt
ttggctactcatgaaatccatttttcaatactgcgagagattgttttcacccctggacag
caagacaaatgcttcatgtgtggtcagatgggtcatttagcagcagattgtgagggaaag
gcaaaaagaaaggctggagagtttgatgaaaaaggtgataaaagcattgtcaaaaaacca
tatcagtttctcaatatctggactcttagagaatatttggactatgagctgagaattcct
aatcctccatttgagattgatttggagcgcattgtggatgattttatatttatatgtttc
tttgtggggaatgattttttaccacatatgcccacactcgagattcgcgagggagcaatc
aacctgcttttggcagtttacaagaaggaatttagggcaatgggtggatatttgactgac
tcatgtaagcctaatttagatcgcgtggagcatttcattcaggcaattggatcttttgaa
gataaaatattccagaaacgtgctcgattgcatcagcggcaagcagatagaataaagcgt
gaaaagggacaacttagaagaggagatgatgcacaacctcaggttcagccagaatctctt
gttccagtttctcggtttcacggttctcgtcttgcttcaggttcttcaccttctccatat
caacaatcaggatctggctacaattctaggaacagacaggccatggaatcaagtggaaaa
ggaaattcacatgcaggcaaagttgctcgtacatcttctgctgctagtattggtgctgcc
atcgttgaagctgagaacaatctggaagaagacgagaaagaaaacaaagaagacttaaaa
gcaaagctgaaggagataattcgtgggaagtccgatgcttttaattctgaaaatcctgaa
gaagataaggttaaattgggggtaccaggttggaaagaaagatattacgaagaaaagttt
tctgccaaaactcccgaggaacgggaggaaatacggaaagatgttgttttgaaatacaca
gaaggcctatgttgggttatgcagtactactatgaaggggttagttcttggcattggttt
tatccataccactacgcaccatttgcttctgatcttaaggatcttagtcagctgagcata
aagtttgagttgggttctcccttcaaaccatttaatcagcttctgggggttttcccagct
gctagctctcatgctcttccagagcagtacaggaaattgatgactgatccaaactcacct
atcattgatttttatcctactgattttgaagtggatatgaatgggaagagattttcgtgg
cagggtattgcaaaattgcctttcattgacgaatcacgacttctttccgaggttgaaaaa
attgaacatacattgacggcagaggaagtccggagaaacagtaccatgtttgacatgctc
tttgtggcatcatctcatcctctttctgtgtctatttactctctcgacaaccgctgtaag
caattgtcaaacagggaaagagctgaatttaaagaaaaaattgatccagaaattagggct
gcatgcagtgaagggatgaatggatatctatctccatgcggtggagaaccctgtccacct
gttttccggtctcctgtattgggcttggaagatatcatggataaccaagtcatatgtgcg
atatacagacttcccgaccctcataagcatataactcgaccacctgcaggtgttacattt
ccaaagaagattgtttcattgggagatctcaaacctgaacctgtgttatggcatgaagat
actgggcgaagaggtcctgataatggaaggtataataatcatcctggaaccacttctgga
cgacaacttggagaagcagctcatcggctggtttctaatagcctacaagtgaaggcagac
tacaatggatatggcaatcatggccgttcaccatcttattctggtaaccatacacgacaa
aattcctatgggactcatctcaggttccatgatcgggaacattcagacattcaccctcct
gaaggtcaataccaatcatcaaaccgaagtagtcatcatcattacaatgatcgacgctgg
aatagtgacggacacatatcgtcaggtagtcgccatccacacaatgggtctcaatcccta
tattatgatagaaataaccgcatggctcctccgcatgggtttgttggtccgcataacgtt
gatcccatttacccaaatggacctatcgcacaaactccacctgggtttgttggtgccaac
ccgtatcccggtggtcacaaccaatatcaaaactaccaatcagctggagcaataggccgt
caacagcaatggccggctgatggtggcagtggttggaatgcaccaccacaggctggcccg
tacattgcgaggggctacagtcagccacaccaatcaggtaatccatactctgcattggat
cggagagcaaataagagagagccgcctcctgcacatgggtatcgccggaattag
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