Cannabis sativa (hemp): 115697204
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Entry
115697204 CDS
T08987
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
csav
Cannabis sativa (hemp)
Pathway
csav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115697204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csav03021
]
115697204
03019 Messenger RNA biogenesis [BR:
csav03019
]
115697204
Transcription machinery [BR:
csav03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
115697204
Messenger RNA biogenesis [BR:
csav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
115697204
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
Torus
zf-CCCH
zf-CCCH_2
zf-CCCH_12
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
115697204
NCBI-ProteinID:
XP_030479979
LinkDB
All DBs
Position
7:complement(55848317..55855237)
Genome browser
AA seq
706 aa
AA seq
DB search
MEDSEGVLSFDFEGGLDAGGLPNPIGGAGPIVQSDSASVTAVSINPVGQGHVVSADHSGP
GANHNKRGSFRQTVCRHWLRSLCMKGEACGFLHQYDKARMPVCRFFRMYGECREQDCVYK
HTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLSSYGYNNKFFQHR
NTGFSQQTEKSQSAQGPNIINQGLVGKPTIESSNVQQQPQQQVQSSIQPTGQNPLQNVPN
GLPNQTNKNASPLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAENV
ILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGRNFAVKWLKLCELSFHKTR
HLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISVAAESKREEEKAKGV
NPDNGGENPDIVPFEDNEEEEEEESDDEEESFVQAPGAVNQGRGRGRGVMWPPHMPLARG
ARPMPGMQGFPPVMMGADGSPYGPVTPDGFPMPDMFGGPRAFNPYGPRFSGDFMGPGSNM
MFRGRPTQPGGVFPGGGFGMMMGPGRGPFMGGMGVQGGNPGRAVRPGGMPPQQMFPPPPP
QSSQNRGPRRDLRGPANDRNDRYIVAGSDQVRGGQEMSGPASGQDDEAHYQQGGGKAHQE
EQFVAGNSLRNDDSESEDEAPRRSRHGEGKKKRRGSEGDTNTGSDL
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggaggactcggagggggttctcagctttgacttcgagggaggtctcgacgccggaggg
ctacccaaccctattggcggggccggaccaattgttcagtcagattcggcttccgtcacc
gccgtctccataaacccggtcggacaaggtcatgtggtttcggcggatcactctggtcct
ggcgccaatcataataagcgtgggagctttcgacagacggtatgccggcattggcttcgg
agtctttgtatgaagggagaagcttgtgggttccttcatcagtacgacaaggcccggatg
cccgtttgccgtttcttccggatgtacggtgagtgccgcgagcaggattgtgtttacaaa
cacactaacgaagatatcaaggagtgtaacatgtacaaattaggtttttgcccaaatggt
ccagattgccgttatagacatgcaaagcttcctggacctccaccccctgtggaagaaatc
cttcaaaagattcagcacttgagttcttatggctacaataacaagttctttcagcaccga
aatactggtttttcccaacaaacagaaaaatcacaaagtgcacaaggccccaatataatc
aatcagggcttggttggaaaacctacaatagagtcttctaatgtccagcagcaaccacag
cagcaggttcaatcgtccatccaaccaactggtcagaacccgttacaaaatgttcccaat
ggcctgcctaatcagacaaacaaaaatgcgtcacctctgcctccaggaatatctaggtat
tttattgttaaaagttgcaaccgtgaaaatctggaattatccgtgcaacaaggagtatgg
gcaactcagagaagcaatgaagctaaacttaatgaagcttttgactctgctgaaaatgtt
atcttgattttctcagtcaacaggactcggcatttccagggctgcgcaaagatgatgtct
agaattggtgggtctgttagtgggggaaattggaagtatgcacatggaactgcgcattac
ggacggaattttgctgtgaaatggttgaagttatgtgaactatccttccacaagactcga
catttaaggaatccatacaatgagaacttaccggttaagattagtagagattgccaagag
ttagagccctccattggtgagcagttagcttcgctgctttatcttgaaccagatagtgaa
cttatggcaatttcagttgcggcagaatcaaaacgagaagaggaaaaagctaagggagtt
aatccagacaatggaggggagaatccggatattgttccatttgaggataatgaagaagag
gaagaagaggaaagtgatgatgaagaagagagctttgtgcaggctcctggggcagttaat
caaggtagaggaagaggcagaggagtcatgtggcctcctcacatgccgctagctcgtggc
gctagacctatgcctggcatgcaaggttttcccccagttatgatgggtgctgacgggtca
ccatatggacctgttacacctgatggatttcccatgccagatatgtttggaggccctcgt
gcttttaatccatacggtccaaggttttctggtgattttatgggaccaggatccaacatg
atgttccggggtcggccaacacaacctgggggtgtgtttcctggtggtggctttgggatg
atgatgggtcctgggcgtggcccatttatgggaggtatgggagttcaaggtggaaatcca
ggccgagctgttcgtccaggtggcatgcccccacagcagatgtttccaccacccccgcca
cagtcttcacaaaaccgtggtccaagaagagatctgaggggaccagccaatgatcgaaat
gacagatatattgttgcggggtctgaccaagtcagggggggtcaagagatgtctggtcca
gctagcggacaagatgatgaggctcactaccaacaagggggtggtaaggctcaccaagaa
gaacagtttgttgctggaaacagcttaagaaatgatgatagtgaaagtgaagatgaagct
ccaagacgatcgagacacggagagggaaagaagaagcgacgaggctccgaaggagacact
aacactggatcagatctctaa
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