Cannabis sativa (hemp): 115697302
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Entry
115697302 CDS
T08987
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
csav
Cannabis sativa (hemp)
Brite
KEGG Orthology (KO) [BR:
csav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csav03041
]
115697302
Enzymes [BR:
csav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115697302
Spliceosome [BR:
csav03041
]
Complex C
Other components
Complex C specific factors
115697302
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
AAA_30
ResIII
Cas3-like_C_2
nSTAND3
AAA_7
TrwB_AAD_bind
AAA_29
AAA_23
AAA_11
Motif
Other DBs
NCBI-GeneID:
115697302
NCBI-ProteinID:
XP_030480108
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All DBs
Position
7:24644360..24677289
Genome browser
AA seq
696 aa
AA seq
DB search
MSQFWKPGTERPSLLDDEEGGVLFFGASSSSSSSGFGYSNIERQKQRLPVYKYRTAILYL
VETHATTIIVGETGSGKTTQIPQFLKEAGWADGGRVIACTQPRRLAVQAVSSRVAEEMGV
KLGEEVGYTIRFEDFTKNGVTMIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTD
ILLGLLKKIQRRRPELRLVISSATIEAKSMSSFFTSKRRRQMEDETVGLKMEPAILSVEG
RGFTVQIQYVEEPVSNYIQAAVSTILLINDQEPMGDILVFLTGQDDIDSAVHLLHEDIQN
RSKNSSGLLILPLYSGLPRAEQELVFAPAPRGKRKVVISTNIAETSLTLEGIVYVIDSGF
SKQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVKEMPNEGIPE
IQRSNLVSCVIQLKSLGIDNILGFEWPASPSPEAMVRALEVLYSLGVLDDDAKLTSPDGF
QVAEIPLDPMIAKMILSSSQLGCSEEIITIAAVLSIQSIWVSSRGAQKEMDEVKLRFATA
EGDHVTFLNVYKGFLQSGKSSQWCYRNFVNYHAMKKVLEVREQLRRTAQRIGLVLKSCEG
DILIVRKAITAGFFANACNLEAYSHNGKYKTIRGSQEVYIHPSSVLFRVNPKWVIYHSLV
STDKQYMRNVISIDPSWLREVAPHFYQHQRPSSIPH
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagttctggaaaccagggacggagaggcctagccttctagacgacgaagagggt
ggagtccttttctttggtgcttcttcttcttcttcttcttcaggatttgggtattcgaat
atcgagaggcagaagcagaggcttccggtttacaagtaccgtactgctatcctttatctg
gtggagacacatgctactaccattattgtcggggaaacgggtagcggcaaaaccacccag
atacctcagttccttaaagaagcgggttgggctgatggtgggcgtgtaatagcatgtaca
caaccaagacggctggcggttcaggctgtttcttcgagggtagcagaagaaatgggggtg
aagcttggagaggaagttggctacacaataagatttgaagattttaccaaaaatggtgta
actatgatcaagtttctcacagatggggtgttacttagggaaatgatggatgatcctctc
cttacaaagtatagtgtcataatggtagatgaggctcatgaaaggtctatttcgactgat
attctgttgggtctcttgaaaaagattcaacgaagacgacctgagttgcgtttggttatc
tcttctgccacaattgaagcaaagtccatgtcttcattctttaccagcaaaaggcgtcgg
caaatggaagatgagactgtcggactaaagatggagcctgcaatcctatcggtggagggt
aggggctttacagtacaaatccaatatgttgaggagcctgtttctaattacatccaagct
gctgtttcaacaatattgttgattaatgatcaggagccaatgggagatattctggtgttt
cttactggtcaagatgatattgattctgctgtgcacttgcttcatgaagatattcaaaac
cgtagtaaaaactcttcagggttgctcattttgcctctatactctggtcttccacgagct
gaacaggagcttgtgtttgctcctgctcctagagggaagaggaaagtagtgatatcaact
aatattgctgagacatctttaaccttggagggaattgtctatgttattgatagtgggttc
tcaaagcagcggttctacaatcctatatcagatattgaaaatctggttgtggcaccgata
tctaaggcttctgctaggcaaagggctggtagggctggtagagttcgtcctggaaaatgt
tacaggttgtatacagaagagtattttgtcaaagaaatgcctaacgaggggataccagag
attcagagatctaatcttgtttcctgtgtcattcagttaaaatctttgggaatagataac
atactgggctttgagtggccagcatctccatcacctgaagctatggttcgtgcacttgaa
gtactttattcacttggagtcctggatgatgatgccaaacttacttcaccagatggattt
caagtagcagagattccattagatccaatgattgcaaaaatgattttatcttcaagtcaa
cttgggtgttcagaggagataataactattgctgcagtactttccattcaatctatctgg
gtttctagtagaggagcacaaaaggagatggatgaggtgaagttgagatttgcaactgct
gagggtgaccatgtgaccttcttgaatgtgtacaaaggatttttgcagtctggtaaatct
tctcagtggtgctataggaactttgttaactatcatgcgatgaagaaagtgcttgaagtc
agagaacagctcagaagaacagctcagagaataggtctcgttttaaaatcctgtgaagga
gatatactaatagtcagaaaagcaattacagctgggtttttcgcaaacgcgtgtaattta
gaggcatacagtcacaatgggaaatataagactatcagaggttctcaggaagtttacatt
cacccctcatctgtgctgttcagagttaatcccaaatgggtaatatatcattcactcgtc
tcgaccgacaagcaatacatgcgaaacgtaatctccatagacccttcttggctaagagaa
gttgccccacatttttaccagcaccagcgtccatcttcaatacctcactaa
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